Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq8 138 2e-27 seq257 125 1e-23 seq27 120 4e-22 >seq8 Length=10307871 Score = 138 bits (152), Expect = 2e-27 Identities = 556/872 (64%), Gaps = 8/872 (1%) Strand=Plus/Plus Query 46338 TTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 46397 ||| |||||||| || || | ||||||||| ||||| ||||| || | ||| || || Sbjct 4255816 TTTCTGGTATTCTCCAACCCTTTTCTCGAAGAAATTGGTTTTCCCCTGCAACGAGATCAG 4255875 Query 46398 TTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAAT 46457 ||||| ||||||||||||| ||| || || || ||| | |||| || | | Sbjct 4255876 CTCCATCCAATCAAACGGATTCTGAACGTTGTAGATCTTTCCATATCCCAAGGCACCGAG 4255935 Query 46458 CAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAG 46517 || | ||| || ||||| || |||||| |||||| ||||| ||||| || | | Sbjct 4255936 CAAACGATCGGCCACGAACTCGATATACTGGCTCATCAGATCACAGTTCATCCCCACCAA 4255995 Query 46518 TTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTAT 46577 ||| | || || | ||||| || || || || || | | || Sbjct 4255996 CGCACACGGCAATGCGTCGCACACGAACTCCCTCTCGATGTCCACTGCGTCGGCAACAAT 4256055 Query 46578 CGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAA 46637 | ||| |||||||| || ||| |||| | | | | ||| || || Sbjct 4256056 TCCCTTGACTCGCTCCTCACTCAGTTTCTGCCTCAACAACTCGTAGAGCAGACACGCGAA 4256115 Query 46638 ATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCAT 46697 ||| || || || || || ||||| || || ||||| || || || | || ||||| Sbjct 4256116 ATCGCAGTGTAGCCCCTCGTCTCTCGAGATCAACTCGTTTGAGAAAGTTAAGCCCGGCAT 4256175 Query 46698 TAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTC 46757 || || ||||| || | ||| ||||| || ||| || || |||||||| || || Sbjct 4256176 CAGGCCGCGCTTCTTCAACCAGAATATCGCACAGAAGCTGCCGGAGAAGAATATCCCCTC 4256235 Query 46758 TACAGCCGCGAATGCGACAAGTCTCTCTCCGTA--ACTGGCATCATTATGAATCCACCTT 46815 || |||||||||| || | ||| || | | | | | | | ||||| || Sbjct 4256236 GACGCAGGCGAATGCGATCAGGCGCTCCGCGAAGGATTCGGA--ACCGTCGATCCA--TT 4256291 Query 46816 TGA--GCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAA 46873 || ||||| || || |||||| || || || | || || || || || || Sbjct 4256292 GGAGGGCCCACTCGGCTTTTTTCGCCACGCAGGGGACGGTCTCGATTGCGCGGAACAGGC 4256351 Query 46874 AGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAAT 46933 | | || || | ||| || | |||| || | || || || ||||| || || | Sbjct 4256352 GGCTCTTCTCGGCCGAATCCTTGATGTATGATTCCAACAAGAGGCTGTACATCTCGGAGT 4256411 Query 46934 GAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCT 46993 | ||||| |||||||| || || || |||||||| | || || | || || || | Sbjct 4256412 GGATGTTCTCAATAGCGATTTGGAAACCGTAAAATGCACGGGCCTCGGAGATTTGGACTT 4256471 Query 46994 CTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATG 47053 | | || || ||| | || || || || || ||| |||||| || || | Sbjct 4256472 CCTTCATGAACCGAGCAGCGAGGTTTTCGAGAACAATACCGTCAGAAGCAGCGAAGAAGG 4256531 Query 47054 CCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATAT 47113 ||| |||||| |||| || | ||| || || || || | | ||||| | || || Sbjct 4256532 CCAGTACATGAGTAATGAAGTGTTTCTCGTCATGGGTTAGGATTTCCCAGTGACGGAGAT 4256591 Query 47114 CTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATAT 47173 ||| || | ||| |||||||| || |||||||| || || || ||||| || ||||| | Sbjct 4256592 CTTGGGAGAGATCAACTTCTTCGGCAGTCCAGAAGGAGGCTTCGGCTTTCTTGTACATTT 4256651 Query 47174 TCCATATATCACGATATTGGATCGGAAAAATA 47205 |||||| | ||||||| || || || ||| Sbjct 4256652 CCCATATTTGGGGATATTGAATTGGGAACATA 4256683 >seq257 Length=623575 Score = 125 bits (138), Expect = 1e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||||||||| | ||| | ||||||| ||| | || | || |||||||| ||| || Sbjct 424936 CCTCCCTGATCAACATAGCGAGCAGTGTCATTGAAGACACGCAGCATTGGAACAATACCA 424877 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || ||||| |||||||| ||| |||| ||||| | | || ||||||||| || ||| Sbjct 424876 TTGGATGTCCCATTTGTACCACAAATGTAACTGCTAGTGGCTCGAATATTATGAACAGAA 424817 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || ||||| || || ||| ||| | |||||| ||||| || ||||| || Sbjct 424816 ACACCAATTCCACCAGCAGATTTGCTGATCACAGCACACTCCTTCAAGGTATCATATATT 424757 Query 76934 CCCTCTATACTATCATCCATCATG 76957 ||||| ||||||||||| ||||| Sbjct 424756 CCCTCGATACTATCATCTTTCATG 424733 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 76993 aGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 ||| || ||||| || | || ||||| |||||||||||||| | || | | || Sbjct 424612 AGTCCCAGCATTGAAGAGAGTTGGAGAGGCATGAGTGAACCAACGCTGTGACATCAAATG 424553 Query 77053 GTATGTTTCAATAACTGCTTCTATATCC-CATTGATGAATTCCTACAGCGACACGCATCA 77111 |||||||| ||| | | || || || | ||| || ||||| ||||| || | ||||| Sbjct 424552 GTATGTTTTGATAGCAGAATCAATGTCATCCTTG-TGGATTCCAACAGCAACCCTCATCA 424494 Query 77112 ACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 77171 |||| ||||| || | ||||||| ||| | | ||||||| ||| ||| | || | Sbjct 424493 ACATGTGCTGTGGCCTTTCTACAACCTTCCCCTGAACCTTCAACAGGTAGGATCTCTCAA 424434 Query 77172 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||||||||| || | | || ||||||||| || || || || Sbjct 424433 GGGTTTTAAAACCGAAGAAATCATAGTCAAAGTCTCTGTCATATATGAT 424385 >seq27 Length=6178458 Score = 120 bits (132), Expect = 4e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||| | ||| | ||||||| |||| | || | || |||||| | ||| || Sbjct 1665525 CCTCCTTGATCAACATAGCGTGCAGTGTCATTAAACACACGCAGCATTGGGACAATACCA 1665466 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || ||||| |||||||| ||| |||||| || | | |||||||||||| || ||| Sbjct 1665465 TTGGATGTCCCATTTGTACCACGAATATAGCTACTAGTGGCACGAATATTATGAACAGAA 1665406 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || |||||||| || ||| ||| | |||||| ||||| || ||||| || Sbjct 1665405 ACACCAATTCCTCCAGCTGATTTGCTGATCACAGCACATTCCTTCAAGGTATCATATATT 1665346 Query 76934 CCCTCTATACTATCATCCATCATG 76957 || || ||||||||||| ||||| Sbjct 1665345 CCTTCAATACTATCATCTTTCATG 1665322 Score = 93.3 bits (102), Expect = 6e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 ||| || ||||||| ||||| || | |||||| || || |||||| || || || Sbjct 1666030 CTCCCTCTCATATTTAGTATACAATCTTTCAAACTCCTCGCCCCAACAGTCTGACAGCCC 1665971 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 |||| ||||| || || | ||| ||||| | ||||| | ||| | || |||||| Sbjct 1665970 AGGAGCCTCATTGGGGCAAAACAAGGACCATTGCCCATCACTTTGAACTCTTTCCATAAA 1665911 Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTG 76670 |||||| || ||||| |||||| ||||||||| | | || | ||||||| | || || Sbjct 1665910 GAGATCGGGAATCCAAAGAGCATAAAATAGATCCCTTGCTCGATGTTCTTCCTGTCGTG 1665852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712902291216960