Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq3603 733 0.0 seq199 196 5e-45 seq74 179 4e-40 seq370 167 3e-36 seq162 156 5e-33 >seq3603 Length=163330 Score = 733 bits (812), Expect = 0.0 Identities = 762/994 (77%), Gaps = 4/994 (0%) Strand=Plus/Minus Query 163928 TTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTG 163987 |||||||||||| |||| || || || ||| | || | || |||||||| || || Sbjct 1446 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTG 1387 Query 163988 ATGATTCCCTGCCTGCTGG-CAGCGACTACATGT-TTCATCATCGCCTTCATCGGTGCTC 164045 ||||| |||| ||| | | | || ||| | ||| || || || |||||||| | ||||| Sbjct 1386 ATGAT-CCCTACCTTATTGACCGCAACTTC-TGTATTTATTATTGCCTTCATTGCTGCTC 1329 Query 164046 CTCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACA 164105 |||| || || || ||||| || || ||||| || |||| || || | |||||||||| Sbjct 1328 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACA 1269 Query 164106 ACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCA 164165 | || ||||||||||| |||| ||| ||||| ||||||||| ||||||| || || | Sbjct 1268 ATATTATCTCTGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTATCCGA 1209 Query 164166 TCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTG 164225 |||||||||| ||| | || |||||| | ||||| |||||||||| |||| ||| Sbjct 1208 TCTGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTG 1149 Query 164226 TGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACC 164285 | | |||||| | |||| | | ||||||||||||||| ||||||||| || || Sbjct 1148 TTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAATGGGAACTTAGTTTCC 1089 Query 164286 GTCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTG 164345 |||| |||||||||||||||||| || ||||| || |||||||| || || || | || Sbjct 1088 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 1029 Query 164346 CAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCA 164405 | || ||| || |||| || | |||||||| |||||||||| |||||||| || | Sbjct 1028 CTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTCTCTGATGGTATGCCTCTAGGAA 969 Query 164406 TCTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACC 164465 ||||||| || ||||||| |||| | || ||||||||||||||||||||||| ||||||| Sbjct 968 TCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 909 Query 164466 CCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACG 164525 | || || ||| | || ||||| ||||| || ||||| || || |||||||| ||||| | Sbjct 908 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 849 Query 164526 GTTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACTATG 164585 |||| |||| |||||| | | | || ||||| |||||||| || || | | Sbjct 848 GTTCCTTGGTAACTTCTAGTTTAATCAGGGAAACCACTGAAAATGAATCTGCTAATGAAG 789 Query 164586 GTTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCACGGTTACTTTG 164645 |||||| || ||||| || |||||||| || || ||||| || ||||| ||||| |||| Sbjct 788 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTG 729 Query 164646 GTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCG 164705 | || |||| |||||||| ||| |||||||| || ||||| | || |||||||| | Sbjct 728 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTAG 669 Query 164706 CAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCACCATGGCATTCA 164765 | || |||||||| || |||||||||||||||||| | || | ||||||||||| |||| Sbjct 668 CTGCTTGGCCTGTAGTAGGTATCTGGTTTACTGCTTTAGGTATCAGCACCATGGCTTTCA 609 Query 164766 ACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACA 164825 |||| || |||||||| |||||||| || | | || |||| |||||||| | |||| Sbjct 608 ACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGACAGTCAAGGTCGTGTAATTAACA 549 Query 164826 CCTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAATG 164885 | ||||| || || ||||||||||| || || |||||||| ||||| || ||||||| Sbjct 548 CTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 489 Query 164886 CTCACAACTTCCCTCTCGACCTTGCTGCTGCTGA 164919 |||||||||||||||| ||||| ||||||| ||| Sbjct 488 CTCACAACTTCCCTCTAGACCTAGCTGCTGTTGA 455 Score = 562 bits (622), Expect = 3e-155 Identities = 724/993 (73%), Gaps = 6/993 (1%) Strand=Plus/Plus Query 165180 AGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTT 165239 || ||||||||||||||||| || ||||| || || | || ||||| ||| ||| | Sbjct 37077 AGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTTCCTTGTGCCTATTTC 37136 Query 165240 GCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCACGGACTT 165299 ||| | || |||||| | ||||| || || || || || |||||||| || ||| | Sbjct 37137 GCTTTAGGAGGTTGGTTCACTGGTACAACCTTTGTAACTTCATGGTATACCCATGGATTG 37196 Query 165300 GCGAGTTCCTATCTTG-AGGGTGCAAACTTTCTT-ACTGCGGCAGTTTCTACTCCAGCAG 165357 || ||||||||| | | ||| ||||| |||||| || || |||||||||||||| || Sbjct 37197 GCTAGTTCCTATTTGGAAGGTTGCAA--TTTCTTAACCGCCGCAGTTTCTACTCCTGCTA 37254 Query 165358 ACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCC 165417 | | | | |||||| | | || |||||||||||||| | ||||| || || | | Sbjct 37255 ATAGTTTAGCACATTCTTTATTACTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTC 37314 Query 165418 GCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTA 165477 | ||||| ||| | || || || ||||||||||| || ||||| || || || | | | | Sbjct 37315 GTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCATGGCGCTTTCGGATTAA 37374 Query 165478 TAGGTTTCATGCTTCGCCAGTTTGAACTGGCACGA-CTTATCGGTATTCGTCCTTACAAT 165536 ||||||||||| | || || || ||||| || ||| || || | | || ||||| ||| Sbjct 37375 TAGGTTTCATGTTACGTCAATTCGAACTTGCTCGATCTGTTCAAT-TGCGCCCTTATAAT 37433 Query 165537 GCTATTGCTTTCTCTGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATGTATCCTCTG 165596 || || || ||||||| ||| |||||||| || ||| ||| || || || ||||| || Sbjct 37434 GCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTA 37493 Query 165597 GGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTG 165656 || || || |||||||| || || || || || ||||| || || |||||| | Sbjct 37494 GGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATC 37553 Query 165657 CTCTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCACATGATGGGCGTAGCA 165716 |||||| |||||||||| ||||| |||||| |||| || ||||| |||||||| || || Sbjct 37554 CTCTTCTTCCAAGGGTTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCC 37613 Query 165717 GGTATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTTTG 165776 || | || || | || |||| | || |||||||||| ||| ||||| |||||||| Sbjct 37614 GGCGTATTGGGTGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTA 37673 Query 165777 TATGAAGATGGTGAACAAGCAAACACTTTCAAAGCATTTGATAGTACTCAGGAAGAGGAA 165836 | ||||||||||| ||||| || ||| || ||| | ||||| | || || Sbjct 37674 TTCGAAGATGGTGACGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAG 37733 Query 165837 ACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGC 165896 |||||||| |||||||| |||||||| || ||||| || || ||||| ||||||| | Sbjct 37734 ACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCC 37793 Query 165897 AATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGT 165956 ||||| |||||| | || ||||||||| | ||||| || || | || | |||| ||| Sbjct 37794 AATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGT 37853 Query 165957 TCTATTGGTATCATTGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAG 166016 || |||| | | ||||| || || || || ||||| ||||| || || || ||||| Sbjct 37854 GCTCTTGGAGTAGTCGGTCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAA 37913 Query 166017 ATTAGAGCTGCTGAGGATCCAGAGTTTGAAACGTTCTATACGAAAAACATCCTCCTTAAT 166076 || | || || || ||||| || |||||||| ||||| || ||||| || ||| | || Sbjct 37914 ATCCGTGCAGCGGAAGATCCTGAATTTGAAACTTTCTACACTAAAAATATTCTCTTAAAC 37973 Query 166077 GAAGGACTCCGTGCCTGGTTGGCTCCTGTAGACCAACCTCATGAGAACTTTGTGTTCCCT 166136 ||||| | ||||| ||| |||| || || || |||||||| ||| || | |||||| Sbjct 37974 GAAGGGATTCGTGCTTGGATGGCGGCTCAGGATCAGCCTCATGAAAACCTTATATTCCCT 38033 Query 166137 GAAGAAGTCTTGCCAAGAGGCAACGCACTTTAA 166169 || || || | ||| | || ||||| |||||| Sbjct 38034 GAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 38066 >seq199 Length=1013994 Score = 196 bits (216), Expect = 5e-45 Identities = 177/224 (79%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 164696 TTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCACC 164755 |||||||| || || |||||||| || |||||||||||||||||| | || | |||||| Sbjct 992602 TTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACTGCTTTAGGTATCAGCACC 992543 Query 164756 ATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGT 164815 ||||| |||||||| || |||||| | |||||||| || | | || |||| |||||| Sbjct 992542 ATGGCTTTCAACCTAAATGGTTTCRATTTCAACCAATCTGTAGTTGACAGTCAAGGTCGT 992483 Query 164816 GTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCAC 164875 || | ||| | ||||| || || ||||||| ||| || || |||||||| ||||| Sbjct 992482 GTAATTAACTCTTGGGCTGATATTATCAACCGYGCTAACCTTGGTATGGAAGTTATGCAT 992423 Query 164876 GAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGA 164919 || ||||||||||||||||||||| | ||||| ||| ||| ||| Sbjct 992422 GAACGTAATGCTCACAACTTCCCTTTAGACCTAGCTACTGTTGA 992379 >seq74 Length=3028681 Score = 179 bits (198), Expect = 4e-40 Identities = 289/410 (70%), Gaps = 13/410 (3%) Strand=Plus/Plus Query 164285 CGTCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGT 164344 ||||| ||||||| ||||||||||| || ||||| | | || ||| | | || | | Sbjct 694356 CGTCTGGGTATGCATCCTTGGATTTCTGTTGCATATTAAGGTCTTGTGGTAGATGCTACT 694415 Query 164345 GCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGC 164404 | || ||| || ||||||| | |||||||| |||||||||| |||||| | || Sbjct 694416 ACTGTCTTCTTGATCTATCCAATTGGTCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGG 694475 Query 164405 ATCTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCAC 164464 |||| | | || ||||||| |||| | || ||| ||||| || |||||||||| |||||| Sbjct 694476 ATCT-TAGTACTTTCAACTTCATGATTGTATTCTAGGCTTAGGACAACATCCTTATGCAC 694534 Query 164465 CCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCAC 164524 || || || ||| | || ||||| ||| | || ||||||||||| |||| ||||| Sbjct 694535 CCATTTCACATGTTAGGTGTAGCTGGTATATTCTATGGTTCTCTGTTTGGTGCTATGCAT 694594 Query 164525 GGTTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGA----GTCCCAGAA 164580 |||| ||| |||||| | | | || |||||||||||| | || ||| Sbjct 694595 TGTTCCTCGGTAACTTCTATTTTAATCAGGGAAACCACCGAAAATTATTTTGTTAATGAA 694654 Query 164581 --CTATGGTTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCACGGT 164638 ||||| | | ||||| | ||| ||||||| || || || || || | || ||| Sbjct 694655 GGTTATGGATTC-AGTTTAG---GGA--AAGAAACTTATAATATTGTAACCACCCATGGT 694708 Query 164639 TACTTTGGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTC 164688 || ||||| ||||| |||||||| ||| |||||||| || | ||| Sbjct 694709 TATTTTGGCGAACTGATCTTCCAATATGCTAGTTTCAACAATTCTCATTC 694758 >seq370 Length=242655 Score = 167 bits (184), Expect = 3e-36 Identities = 209/285 (73%), Gaps = 2/285 (1%) Strand=Plus/Minus Query 165417 CGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTT 165476 || ||||| ||| | || || || ||||||||||| || ||||| || | || | | | Sbjct 138072 CGTTGGTGTCAATTAGGCGGCCTGTGGACTTTTGTTGCTCTCCATGGCDCTTTCGGATTA 138013 Query 165477 ATAGGTTTCATGCTTCGCCAGTTTGAACTGGCACGA-CTTATCGGTATTCGTCCTTACAA 165535 |||||||||||| | || || || ||||| || ||| || || | | || ||||| || Sbjct 138012 ATAGGTTTCATGTTACGTCAATTCGAACTTGCTCGATCTGTTCAAT-TGCGCCCTTATAA 137954 Query 165536 TGCTATTGCTTTCTCTGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATGTATCCTCT 165595 ||| | || ||||||| ||| |||||||| || ||| ||| || || || ||||| || Sbjct 137953 TGCATTCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACT 137894 Query 165596 GGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCT 165655 || || || |||||||| || || || || || ||||| || || |||||| | Sbjct 137893 AGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCAT 137834 Query 165656 GCTCTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCA 165700 |||||| |||||||||| ||||| |||||| |||| || || || Sbjct 137833 CCTCTTCTTCCAAGGGTTTCATAATTGGACGTTGAACCCATTCCA 137789 >seq162 Length=1386390 Score = 156 bits (172), Expect = 5e-33 Identities = 255/365 (70%), Gaps = 2/365 (1%) Strand=Plus/Plus Query 165781 AAGATGGTGAACAAGCAAACACTTTCAAAGCATTTGATAGTACTCAGGAAGAGGAAACTT 165840 |||||||||| ||||| || ||| || ||| || | ||| | || | | || Sbjct 711978 AAGATGGTGACGGTGCAAATACATTCCGTGCTTTTAATCCAATTCAAGCTGAACAGAATT 712037 Query 165841 ATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATA 165900 |||| |||||||||||| | || || ||||| || || |||| |||||||| ||||| Sbjct 712038 ATTCAATGGTCACTGCTGATCGCTTTTGGTCCCAAATCCTTGGGATTGCTTTTTACAATA 712097 Query 165901 AGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTA 165960 | |||||| | | ||||||||| | ||||| | || | || | |||| ||| || Sbjct 712098 AACGTTGGTTACGTTTCTTTATGTTATTTGTATCAGTAACCGGTTTATGGATGAGTGCTC 712157 Query 165961 TTGGTATCA-TTGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATT 166019 |||| | || | ||||| | || || || ||||| ||||| || || || ||||| ||| Sbjct 712158 TTGG-AGCAGTCGGTCTGACTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATT 712216 Query 166020 AGAGCTGCTGAGGATCCAGAGTTTGAAACGTTCTATACGAAAAACATCCTCCTTAATGAA 166079 | || || || ||||| | ||||||| ||||| || ||||| || ||| | || ||| Sbjct 712217 CGTGCAGCAGAAGATCCTAAATTTGAAATTTTCTACACTAAAAATATTCTCTTAAACGAA 712276 Query 166080 GGACTCCGTGCCTGGTTGGCTCCTGTAGACCAACCTCATGAGAACTTTGTGTTCCCTGAA 166139 || | ||| | ||| |||| || || || ||||||| ||| || | ||| ||| Sbjct 712277 GGGATTCGTCCTTGGATGGCGGCTCAGGATCAGTCTCATGAAAACCTTATAATCCTTGAC 712336 Query 166140 GAAGT 166144 || || Sbjct 712337 GAGGT 712341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557629284639960