Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq3 87.8 1e-12 seq7 86.0 5e-12 >seq3 Length=72893213 Score = 87.8 bits (96), Expect = 1e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 101752 AGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCC 101811 ||| |||||||| | |||||| || || | || ||| || ||||||||||||||||| Sbjct 48339613 AGTAACATGAGCTACCATGCATGTCAACAAAGCATATGATGCGATGTTAAATGGCACTCC 48339554 Query 101812 TAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATA 101871 || |||||||| || || | ||||||| ||||||||| | || |||| ||||| Sbjct 48339553 CAAACCCATATCTGCAGAGCGCTGATACATTTGACAGGATAACTCCCCATTGGCAACATA 48339494 Query 101872 AAATTG 101877 ||| || Sbjct 48339493 AAACTG 48339488 Score = 84.2 bits (92), Expect = 2e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 102187 AGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAATACTCTCT 102245 ||| ||||| |||||||||||||| |||||||||||||||||||||||||| ||| ||| Sbjct 48338784 AGTTGATCCACTGATAAACCACAAGAGTTCTTCAACAACACCTCTCCAAAAGACTTTCT 48338726 >seq7 Length=114765206 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 101756 ACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAAC 101815 |||||||| |||||||| || | | | ||| |||||||||||||||||||| | Sbjct 108616561 ACATGAGCTATCATGCATGTCAGCAAGGCATAAGATGCAATGTTAAATGGCACTCCCAGA 108616620 Query 101816 CCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAAT 101875 ||||||||||| |||| ||||||| |||||||| | || |||| |||||||| Sbjct 108616621 CCCATATCAGCAGATCGCTGATACATCTGACAGGATAACTCCCCATTGGCTACATAAAAC 108616680 Query 101876 TG 101877 || Sbjct 108616681 TG 108616682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361087444153694