Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2 178 2e-39 >seq2 Length=96359640 Score = 178 bits (196), Expect = 2e-39 Identities = 392/584 (67%), Gaps = 8/584 (1%) Strand=Plus/Plus Query 24131 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 24190 |||||| |||||||| ||||| | ||||||||| || |||||| ||||| || || || Sbjct 42515840 CAAACAAGCGAAATCACAGTGCAAACCCTCGTCCCTTGAAATTAACTCGTTCGAGAAAGT 42515899 Query 24191 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAA 24249 | ||| ||||||| || |||||||| | ||| ||||| | | || | | | ||||| | Sbjct 42515900 TAATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAG-CACAGAAGCTTCCAGAGA 42515958 Query 24250 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAAC---CGGCGCTGT 24306 | ||||| ||||| || ||||| |||| | | || || | ||| | || Sbjct 42515959 AAAAAATACCTTCCACACAAGCAAATGCAACCAAACGCTCCGCAAATGTTTCGGAACCGT 42516018 Query 24307 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 24366 | ||||| | | ||||| | |||||||| | ||||| || || ||||| | | Sbjct 42516019 CG---ATCCAACGTAGTGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTG 42516075 Query 24367 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 24426 | || | | ||||||| | | || || | || | || | | ||||| | Sbjct 42516076 CGCGGAATAATCTGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACTGT 42516135 Query 24427 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 24486 |||| || || || ||||||||||| || ||||| || ||||||||| | ||||||| Sbjct 42516136 ACATCTCGGAGTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGCGCCTCGG 42516195 Query 24487 TAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 24546 || || |||||| | || | | | |||| ||||| || || ||||| || Sbjct 42516196 CAACTTGGACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCGGAGG 42516255 Query 24547 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCC 24606 | |||||||| || | || || | || |||| |||| | || ||||| | | || Sbjct 42516256 CGGCAAAAAAGGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGGGTTAGGGTTTCCC 42516315 Query 24607 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 24666 | | | | |||| ||||| ||| |||||||| | ||||| || || ||| || | Sbjct 42516316 AGTGACGGTTATCGGAAGATAAATCGACTTCTTCAGCAGTCCAGAAAGAGGCCAAGGCTT 42516375 Query 24667 TTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 24710 |||| ||||| | ||| || | | ||||||||||| || ||| Sbjct 42516376 TTTTGTACATTTCCCAAATTTGTGGGTATTGAATTGGGAACATA 42516419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593445563985120