Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq6 93.3 4e-14 seq1591 91.5 1e-13 seq1 89.7 4e-13 seq8 84.2 2e-11 seq1898 82.4 7e-11 >seq6 Length=97571839 Score = 93.3 bits (102), Expect = 4e-14 Identities = 111/149 (74%), Gaps = 4/149 (3%) Strand=Plus/Plus Query 29045 AAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAA 29104 ||||||| || |||||||| | || |||||||||||| | || ||||| || || Sbjct 19649416 AAAAATTCAAGACAAAGAAGGAATTCCTCCAGATCAACAAAGGTTAATTTTTGCTGGAAA 19649475 Query 29105 ACAACTGGAAGAT--TCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTT 29162 |||||| |||||| || || || || | ||||| || |||||||||||||| ||||| Sbjct 19649476 ACAACTTGAAGATGGTCGAACAC--TGACTGATTATAACATTCAGAAGGAATCCACTCTC 19649533 Query 29163 CACATGGTGTTACGATTACGAGGAGGGTA 29191 || | ||||| || | || ||||| || Sbjct 19649534 CATCTTGTGTTGCGTCTTCGTGGAGGTTA 19649562 >seq1591 Length=249109 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || |||||||| | ||| |||||| ||||| |||||||| || ||||| || || || Sbjct 28445 GACAAAGAAGGAATTCCCCCAGATCAGCAAAGGCTTATCTTCGCCGGCAAGCAGCTTGAG 28504 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 || | || | |||||||||||||| |||||||| ||||| |||||| |||| | Sbjct 28505 GACGGCCGTACCCTCGCCGATTACAATATCCAGAAGGAGTCTACCCTTCACTTGGTCCTC 28564 Query 29175 CGATTACGAGGAGGG 29189 || | ||||| ||| Sbjct 28565 CGTCTCCGAGGTGGG 28579 >seq1 Length=110538649 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || || ||||| || || || ||||||||||| ||| || | | Sbjct 85489643 AATGCAAATCTTTATTAAAACCTTAACCGGGAAAACCATTACATTAGAAGTTGAGAGCTC 85489702 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGT-AGATC 29079 || || | | || ||||| ||||| ||||| |||||| | ||||| ||| | Sbjct 85489703 GGACACAATTGATAATGTTAAGGCGAAAATCCAAGATAAGGAAGGTAT-CCCGTCAGACC 85489761 Query 29080 AACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACA 29139 | || || || || ||||| || || ||| | |||||| |||| |||| ||||| | Sbjct 85489762 AGCAGAGGCTGATTTTTGCTGGGAAGCAATTAGAAGATGGACGAACTCTGGCTGATTATA 85489821 Query 29140 ATATTCAGAAGGAATCTACTCTTCAC 29165 | || ||||||||||| || |||||| Sbjct 85489822 ACATCCAGAAGGAATCCACCCTTCAC 85489847 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| ||| | ||||| || || || || ||||| || ||| || | | Sbjct 85490327 AATGCAAATCTTCGTTAAAACTTTAACAGGAAAGACCATCACACTGGAAGTTGAGAGCTC 85490386 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| ||| | | | || | ||| || || ||||| || ||| | || || || Sbjct 85490387 AGACACGATTGACAATGTGAAGGCGAAGATACAGGATAAGGAGGGTATTCCACCGGACCA 85490446 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||| || ||||||||||| || || || |||| ||| | || |||| |||||||| Sbjct 85490447 ACAGAGGCTTATCTTTGCTGGGAAGCAGTTGGAGGATGGTAGGACATTGGCTGATTACAA 85490506 Query 29141 TATTCAGAAGGAATCTACTCTTCA 29164 ||| |||||||| |||||||| || Sbjct 85490507 TATCCAGAAGGAGTCTACTCTCCA 85490530 Score = 82.4 bits (90), Expect = 7e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||| | || | ||||| ||||| || ||||| || || ||| ||| | | Sbjct 85489415 AATGCAAGTTTTTGTTAAAACCTTGACTGGAAAAACAATCACATTGGAAGTCGAAAGCTC 85489474 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || ||| | | || ||||| ||||| ||||| |||||| | || |||||| Sbjct 85489475 GGACACGATTGATAATGTTAAGGCCAAAATCCAAGATAAGGAAGGTATTCCACCAGATCA 85489534 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 |||| | | |||||||| || ||||| || || ||| ||| | || |||||||| Sbjct 85489535 ACAACGTTTGATCTTTGCAGGAAAACAGCTCGAGGATGGGCGTACTCTCGCGGATTACAA 85489594 Query 29141 TATTCAGAAGGAATCTACTCTTCAC 29165 |||||| ||||| || || || ||| Sbjct 85489595 TATTCAAAAGGAGTCAACACTCCAC 85489619 >seq8 Length=47755514 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | || || |||||||| |||||||| ||| || ||| | Sbjct 5426836 ATGCAGATTTTCGTGAAGACTTTGACGGGGAAAACCATCACCTTGGAGGTGGAGAGTTCT 5426777 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | | || | ||| || ||| || || || ||| | || ||||| Sbjct 5426776 GATACGATCGACAATGTGAAGGCTAAGATTCAGGACAAGGAGGGTATCCCGCCGGATCAG 5426717 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || || || ||||| || || ||| |||||||| | ||| |||| ||||| ||| Sbjct 5426716 CAGAGGCTGATTTTTGCTGGGAAGCAATTGGAAGATGGAAGGACTCTGGCTGATTATAAT 5426657 Query 29142 ATTCAGAAGGAATCTACTCTTCAC 29165 ||||||||||| || ||||| ||| Sbjct 5426656 ATTCAGAAGGAGTCAACTCTGCAC 5426633 >seq1898 Length=217218 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || | ||||| || |||||||| || || ||| ||| || | || Sbjct 78415 ATGCAGATTTTTGTTAAAACTTTAACGGGCAAGACGATCACCCTTGAAGTTGAGAGCTCA 78474 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || || | | || | ||| ||| || || || || ||| | || ||| || Sbjct 78475 GATACCGTCGACAATGTAAAGGCAAAGATCCAGGACAAGGAGGGTATTCCTCCAGACCAG 78534 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || | || ||||| || |||||||| || ||| | || | || ||||||||| Sbjct 78535 CAGAGGTTGATATTTGCTGGGAAACAACTCGAGGATGGAAGGACCCTTGCAGATTACAAT 78594 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTG 29171 |||||||||||||| || ||||| ||||| Sbjct 78595 ATTCAGAAGGAATCAACCCTTCATTTGGTG 78624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428141834488070