Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq1 87.8 1e-12 seq8 84.2 2e-11 seq6 84.2 2e-11 seq1898 82.4 6e-11 seq1591 82.4 6e-11 >seq1 Length=110538649 Score = 87.8 bits (96), Expect = 1e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| || ||| | || ||| || || ||||| || ||||| || |||||||||||| Sbjct 85489965 GATAAGGAGGGTATCCCACCAGACCAGCAGAGACTGATTTTTGCAGGGAAACAATTGGAA 85490024 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 ||| | ||| | || ||||| ||||||||||||||||| || |||||| Sbjct 85490025 GATGGAAGGACTCTTGCAGATTATAATATTCAAAAGGAATCCACCCTTCAC 85490075 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||||||||| | || |||||||| || ||||| || || ||| || | | Sbjct 86551311 AATGCAAATATTTGTTAAGACATTGACTGGAAAAACAATCACATTGGAAGTTGAGAGCTC 86551252 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | | | ||| |||||| ||||| |||||| | || || || Sbjct 86551251 GGACACTATTGATAACGTTAAGGCGAAAATTCAAGATAAGGAAGGTATTCCACCGGACCA 86551192 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 |||||| || || ||||| || || |||||||||||| ||| |||| ||||| || Sbjct 86551191 ACAAAGGCTGATTTTTGCTGGGAAGCAATTGGAAGATGGGCGCACTCTGGCAGATTATAA 86551132 Query 25214 TATTCAAAAGGAATCTACTCTTCAC 25238 |||||||||||| || || || ||| Sbjct 86551131 TATTCAAAAGGAGTCAACGCTCCAC 86551107 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| ||| | ||||| || || || || ||||| || ||| || | | Sbjct 85490327 AATGCAAATCTTCGTTAAAACTTTAACAGGAAAGACCATCACACTGGAAGTTGAGAGCTC 85490386 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| ||| | | | || | ||| || || ||||| || ||| | || || || Sbjct 85490387 AGACACGATTGACAATGTGAAGGCGAAGATACAGGATAAGGAGGGTATTCCACCGGACCA 85490446 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||| || ||||||||||| || || || ||||| ||| | || |||| |||||||| Sbjct 85490447 ACAGAGGCTTATCTTTGCTGGGAAGCAGTTGGAGGATGGTAGGACATTGGCTGATTACAA 85490506 Query 25214 TATTCAAAAGGAATCTACTCTTCA 25237 ||| || ||||| |||||||| || Sbjct 85490507 TATCCAGAAGGAGTCTACTCTCCA 85490530 >seq8 Length=47755514 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| | || || |||||||| |||||||| ||| || ||| | Sbjct 5426836 ATGCAGATTTTCGTGAAGACTTTGACGGGGAAAACCATCACCTTGGAGGTGGAGAGTTCT 5426777 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | | || | ||| || ||| || || || ||| | || ||||| Sbjct 5426776 GATACGATCGACAATGTGAAGGCTAAGATTCAGGACAAGGAGGGTATCCCGCCGGATCAG 5426717 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || || || ||||| || || |||||||||||| | ||| |||| ||||| ||| Sbjct 5426716 CAGAGGCTGATTTTTGCTGGGAAGCAATTGGAAGATGGAAGGACTCTGGCTGATTATAAT 5426657 Query 25215 ATTCAAAAGGAATCTACTCTTCAC 25238 ||||| ||||| || ||||| ||| Sbjct 5426656 ATTCAGAAGGAGTCAACTCTGCAC 5426633 >seq6 Length=97571839 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/149 (73%), Gaps = 4/149 (3%) Strand=Plus/Plus Query 25118 AAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAA 25177 ||||||| || |||||||| | || |||||||||||| | || ||||| || || Sbjct 19649416 AAAAATTCAAGACAAAGAAGGAATTCCTCCAGATCAACAAAGGTTAATTTTTGCTGGAAA 19649475 Query 25178 ACAATTGGAAGAT--TCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTT 25235 |||| | |||||| || || || || | ||||| || ||||| |||||||| ||||| Sbjct 19649476 ACAACTTGAAGATGGTCGAACAC--TGACTGATTATAACATTCAGAAGGAATCCACTCTC 19649533 Query 25236 CACATGGTGTTACGATTACGAGGAGGGTA 25264 || | ||||| || | || ||||| || Sbjct 19649534 CATCTTGTGTTGCGTCTTCGTGGAGGTTA 19649562 >seq1898 Length=217218 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| ||||| ||||||| ||||| || || ||||| || ||| ||| | | Sbjct 78871 ATGCAGATATTTGTCAAAACTTTGACAGGAAAGACCATCACTTTGGAAGTGGAGAGCTCT 78930 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | | ||||| |||||| ||||||||||| | || |||||| Sbjct 78931 GACACTATTGACAACGTCAAGGCCAAAATTCAGGATAAAGAAGGGATCCCACCAGATCAG 78990 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || || || ||||| || || || |||| ||| || | || ||||||||| Sbjct 78991 CAGAGGCTCATATTTGCTGGTAAGCAGCTGGAGGATGGGCGCACCCTTGCAGATTACAAT 79050 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTG 25244 || ||||||||||| || || ||| | ||| Sbjct 79051 ATCCAAAAGGAATCCACACTCCACCTTGTG 79080 >seq1591 Length=249109 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || |||||||| | ||| |||||| ||||| |||||||| || ||||| || | || Sbjct 28445 GACAAAGAAGGAATTCCCCCAGATCAGCAAAGGCTTATCTTCGCCGGCAAGCAGCTTGAG 28504 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 || | || | |||||||||||||| || ||||| ||||| |||||| |||| | Sbjct 28505 GACGGCCGTACCCTCGCCGATTACAATATCCAGAAGGAGTCTACCCTTCACTTGGTCCTC 28564 Query 25248 CGATTACGAGGAGGG 25262 || | ||||| ||| Sbjct 28565 CGTCTCCGAGGTGGG 28579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410610585040316