Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq1 111 2e-19 seq11 104 3e-17 seq854 98.7 1e-15 seq6 98.7 1e-15 seq12110 91.5 2e-13 >seq1 Length=110538649 Score = 111 bits (122), Expect = 2e-19 Identities = 135/191 (71%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 146088 CTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAA 146147 |||| || ||||||||||||| ||||| | | ||| || ||||| || |||||||||| Sbjct 86551122 CTTTTGA-ATATTATAATCTGCCAGAGTGCGCCCATCTTCCAATTGCTTCCCAGCAAAAA 86551180 Query 146148 TCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNN 146207 ||| ||||| || ||||| ||||| ||||| |||||||| Sbjct 86551181 TCAGCCTTTGTTGGTCCGGTGGAATACCTTCCTTATCTTGAATTTTCGCCTTAACGTTAT 86551240 Query 146208 NNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGA 146267 ||| || || || || ||||| | |||||||||||| || || ||||| |||| | Sbjct 86551241 CAATAGTGTCCGAGCTCTCAACTTCCAATGTGATTGTTTTTCCAGTCAATGTCTTAACAA 86551300 Query 146268 ATATTTGCATT 146278 ||||||||||| Sbjct 86551301 ATATTTGCATT 86551311 Score = 104 bits (114), Expect = 3e-17 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 ||||| || || | |||||||| | ||| ||||| || ||||||||||| ||||| ||| Sbjct 14109689 ATATTGTAGTCAGCAAGAGTTCGCCCATCCTCTAACTGCTTTCCAGCAAAGATCAACCTT 14109630 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| |||||||||||||| |||||||| Sbjct 14109629 TGCTGATCTGGAGGAATTCCTTCCTTATCTTG 14109598 Score = 93.3 bits (102), Expect = 6e-14 Identities = 106/140 (76%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCT 146107 ||||||| || || || | || | || | || ||||| ||| || |||||||||||| Sbjct 85490100 TTCCACCCCTTAGCCTGAGAACAAGGTGAAGGGTGGATTCCTTTTGA-ATATTATAATCT 85490042 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | |||||| || | ||| || |||||||| || |||||||||| ||| ||||| || || Sbjct 85490041 GCAAGAGTCCTTCCATCTTCCAATTGTTTCCCTGCAAAAATCAGTCTCTGCTGGTCTGGT 85489982 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || || || ||||| || Sbjct 85489981 GGGATACCCTCCTTATCCTG 85489962 Score = 93.3 bits (102), Expect = 6e-14 Identities = 131/191 (69%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 146088 CTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAA 146147 |||| || || ||||| || | |||||| || | || || |||||||| |||||||||| Sbjct 85490288 CTTTTGA-ATGTTATAGTCAGCAAGAGTCCTCCCGTCTTCCAATTGTTTCCCAGCAAAAA 85490230 Query 146148 TCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNN 146207 ||| || ||||||||||| ||||| ||||| || ||||| Sbjct 85490229 TCAGCCTCTGCTGATCCGGTGGAATGCCTTCCTTGTCTTGAATTTTGGCCTTAACATTGT 85490170 Query 146208 NNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGA 146267 || || || || || ||||| | ||||||||||| || ||||| || |||| | Sbjct 85490169 CTATCGTGTCCGAGCTCTCAACTTCCAACGTGATTGTTTTTCCAGTTAAGGTCTTAACAA 85490110 Query 146268 ATATTTGCATT 146278 | ||||||||| Sbjct 85490109 AGATTTGCATT 85490099 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| || || || | |||| ||| | ||| ||||| || ||||| || || | | Sbjct 14110190 CCACCCCTCAGCCTCAGCACCAGATGGAGAGTGGATTCCTTCTGAATATTGTAGTCAGCA 14110131 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | ||| || | ||| |||||||| || ||||| || |||||||| |||||| Sbjct 14110130 AGGGTACGACCATCCTCAAGTTGCTTTCCAGCGAAGATCAACCTCTGCTGATCTGGAGGA 14110071 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||||||||| || Sbjct 14110070 ATGCCTTCTTTATCCTG 14110054 Score = 89.7 bits (98), Expect = 8e-13 Identities = 78/96 (81%), Gaps = 1/96 (1%) Strand=Plus/Plus Query 146088 CTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAA 146147 |||| || || |||||||| | |||||||| | ||| ||||||||||| || ||||||| Sbjct 86550668 CTTTTGA-ATGTTATAATCAGCTAGAGTTCTTCCATCTTCTAATTGTTTCCCTGCAAAAA 86550726 Query 146148 TCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTAT 146183 ||||||||||||| || || || || || || |||| Sbjct 86550727 TCAATCTTTGCTGGTCTGGTGGGATACCCTCCTTAT 86550762 >seq11 Length=61252062 Score = 104 bits (114), Expect = 3e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || || || || || |||| || | || |||||||| ||||| ||||| Sbjct 13809914 GTTCCTCCCCTGAGCCTCAAAACCAGGTGAAGTGTTGATTCTTTCTGGATATTGTAATCA 13809855 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||||||| | ||| || || |||||||||||||||||||| || |||||||| ||| Sbjct 13809854 GCCAGAGTTCGACCATCTTCCAACTGTTTTCCAGCAAAAATCAACCTCTGCTGATCAGGA 13809795 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || |||||||| || || Sbjct 13809794 GGTATCCCTTCTTTGTCCTG 13809775 >seq854 Length=364260 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| | || || ||||| ||||||||||| | |||||| || | ||| || Sbjct 70161 ACCAAATGCAGTGTGGACTCTTTCTGGATATTATAATCAGCAAGAGTCCTCCCATCCTCA 70102 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | || || |||||||| ||||||| |||||||| || ||||| |||||||||||||| Sbjct 70101 AGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCTGGCGGAATCCCTTCTTTATCTTG 70043 Score = 86.0 bits (94), Expect = 9e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 || || || |||| |||||| | || ||| |||| || ||||||||||| ||||| || Sbjct 69222 ATGTTGTAGTCTGCAAGAGTGCGGCCATCCTCTAGCTGCTTTCCAGCAAAGATCAACCTC 69163 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| |||||||||||||| || || || Sbjct 69162 TGCTGATCGGGAGGAATTCCTTCCTTGTCCTG 69131 >seq6 Length=97571839 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125 || || | ||| | ||| ||||| || || |||||||| | || |||| | ||| Sbjct 19649544 AACACAAGATGGAGAGTGGATTCCTTCTGAATGTTATAATCAGTCAGTGTTCGACCATCT 19649485 Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185 || | |||||||||||||||||| || ||||| ||||| ||||||||||||||||| ||| Sbjct 19649484 TCAAGTTGTTTTCCAGCAAAAATTAACCTTTGTTGATCTGGAGGAATTCCTTCTTTGTCT 19649425 Query 146186 TG 146187 || Sbjct 19649424 TG 19649423 Score = 98.7 bits (108), Expect = 1e-15 Identities = 88/108 (81%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 146081 GTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCC 146139 || ||||| ||| || ||||| ||||| | ||| |||| | ||| || | ||||||||| Sbjct 19666968 GTGGATTCCTTTTGA-ATATTGTAATCAGCAAGTGTTCGACCATCTTCCAGTTGTTTTCC 19666910 Query 146140 AGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||||||| ||||| || || |||||||||||||| || ||||| Sbjct 19666909 AGCAAAAATCAACCTTTGTTGGTCTGGAGGAATTCCTTCCTTGTCTTG 19666862 >seq12110 Length=10092 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || || || || || || | || | ||| |||||||| || || ||||| Sbjct 4419 GTTCCTCCCCTGAGCCTCAAAACAAGGTGAAGAGTTGATTCTTTCTGAATGTTGTAATCA 4478 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | || || | | ||| || || ||||| ||||||||||||| ||| |||||||| ||| Sbjct 4479 GCCAGGGTCCGCCCATCTTCCAACTGTTTCCCAGCAAAAATCAGTCTCTGCTGATCAGGA 4538 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || ||||||||||| || Sbjct 4539 GGTATGCCTTCTTTATCCTG 4558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743180715988480