Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq1591 118 7e-22 seq2 105 4e-18 seq1 104 2e-17 seq1629 100 2e-16 >seq1591 Length=249109 Score = 118 bits (130), Expect = 7e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || | |||||||||||||| ||| || || || || || ||||||||||| | Sbjct 29263 TCCTCCCCTCAGCCTCAGCACCAAGTGCAAGGTGGACTCCTTTTGAATGTTGTAGTCTGC 29204 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || || | || ||||||||||| ||||| || || |||| ||||||||| ||| Sbjct 29203 AAGGGTGCGACCATCTTCCAACTGCTTTCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGG 29144 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||||| ||| | | | | || | || | ||| || Sbjct 29143 AATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATAGTGTCAGAACTTTCAAC 29084 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||||||||| ||||| || ||||||||||| Sbjct 29083 CTCCAGGGTGATGGTCTTGCCGGTGAGGGTTTTGACGAAGATCTGCAT 29036 Score = 95.1 bits (104), Expect = 8e-15 Identities = 155/219 (71%), Gaps = 12/219 (5%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | ||| || ||||| |||||||| |||| || |||| | || Sbjct 28791 AGGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGGCGAGGGTACGGCCATCC 28732 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| ||||| || | || ||||||||| || | | |||||| || Sbjct 28731 TCGAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGTGGAATTCCCTCCTTATC- 28673 Query 34298 GCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTC-GA---TTCGACGTCCACCGTG 34351 || ||||| ||| | || |||||| ||| || |||||| || | ||| Sbjct 28672 -CTGAATTTTGGCCTTGACAT----TATCGATGGTGTCAGAACTTTCGACCTCAAGGGTG 28618 Query 34352 ATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || |||||||||||||| ||||| || |||||||||||| Sbjct 28617 ATTGTTTTGCCGGTGAGGGTTTTGACGAAGATCTGCATC 28579 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| |||||||| || | || |||| | || || | ||||||||| ||||| Sbjct 28999 TTCCTTCTGGATGTTGTAATCAGCTAGGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAA 28940 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGA 34315 || | || ||||||||| ||| | || |||||| || || ||||| ||| | | Sbjct 28939 GATCAACCTCTGCTGGTCTGGGGGAATGCCCTCCTTATC--CTGAATTTTGGCCTTGACA 28882 Query 34316 TCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTC 34375 | | | || | || | ||||| || | |||||||| ||||| ||||| ||||| Sbjct 28881 TTGTCGATGGTGTCAGAACTCTCGACCTCAAGGGTGATGGTCTTGCCTGTGAGGGTTTTG 28822 Query 34376 ACAAAGATCTGCAT 34389 || ||||||||||| Sbjct 28821 ACGAAGATCTGCAT 28808 Score = 86.0 bits (94), Expect = 4e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| ||| | ||| || ||||| || ||||| |||| || |||| |||| Sbjct 28563 AGGACCAAGTGAAGGGTAGACTCCTTCTGGATATTGTAATCGGCGAGGGTACGGCCGTCC 28504 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| ||||| || |||| ||||| || ||| | | || ||||| Sbjct 28503 TCAAGCTGCTTGCCGGCGAAGATAAGCCTTTGCTGATCTGGGGGAATTCCTTCTTTGTCC 28444 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 || ||| ||||| | | | | || | |||| ||||| || | |||||||| Sbjct 28443 TGGAT-TTTGGCTTTTACGTTGTCGATTGTGTCGGAACTCTCGACCTCAAGAGTGATGGT 28385 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || ||||| || |||||||| |||||||||||| Sbjct 28384 CTTTCCGGTTAGGGTTTTCACGAAGATCTGCATC 28351 >seq2 Length=96359640 Score = 105 bits (116), Expect = 4e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| || | ||| || ||||| |||||||| || | || ||| | || Sbjct 95422845 AGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGCTAGGGTTCGGCCATCT 95422786 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||| || || ||||||||||||| ||||||||| || | || |||||||| Sbjct 95422785 TCAAGCTGTTTTCCGGCGAAAATGAGCCTCTGCTGGTCCGGTGGGATGCCTTCCTTGTCC 95422726 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 |||||| ||| | | | | || | |||| |||||||| || | |||||||| Sbjct 95422725 TGGATCTTTGCCTTCACGTTGTCGATTGTGTCGGAGGATTCGACCTCAAGGGTGATGGTC 95422666 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || || || |||||||| |||||||||||| Sbjct 95422665 TTACCCGTCAGGGTTTTCACGAAGATCTGCATC 95422633 >seq1 Length=110538649 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| || || | ||| || ||||| |||||||| |||| || |||| |||| Sbjct 83615678 AGCACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGCTAGGGTACGGCCGTCT 83615737 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || |||||||| || |||||||| || ||| | | ||||| || Sbjct 83615738 TCAAGCTGCTTTCCGGCGAAAATCAGACGCTGCTGATCTGGGGGAATCCCTTCCTTATCT 83615797 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||||| | || | | || | |||| ||||| || || | ||||| || Sbjct 83615798 TGGATCTTG-GCTTTCACATTGTCGATTGTGTCGGAAGATTCAACCTCAAGGGTGATTGT 83615856 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||| || || || |||||||| |||||||||||| Sbjct 83615857 TTTACCCGTTAGGGTTTTCACGAAGATCTGCATC 83615890 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34160 AATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCG 34219 ||||| || | || ||||||||| || || | ||| || ||||| || |||||||| Sbjct 86550399 AATCCACCCCTCAACCTCAGCACAAGATGGAGCGTAGACTCCTTCTGGATATTGTAGTCT 86550458 Query 34220 GACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACG 34279 | ||| | | || |||||||| || || || || ||||||| |||||||||| Sbjct 86550459 GCCAGTGTCCTACCATCCTCCAACTGTTTTCCAGCAAAGATGAGCCTCTGCTGGTCGGGC 86550518 Query 34280 GGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCG 34339 || | | ||||| || |||||| ||| | || | | |||| || | || Sbjct 86550519 GGAATACCTTCCTTATCCCGTATCTTCGCCTTCACATTGTCAATCGTGTCTGAGCTCTCA 86550578 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || | ||||||||||| || || | ||||| |||||||| ||||| Sbjct 86550579 ACTTCTAATGTGATGGTTTTTCCCGTTAAGGTTTTAACAAAGATTTGCAT 86550628 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 34159 GAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTC 34218 |||||| || | |||||||||||| || || | |||| || ||||| || ||||| || Sbjct 85490558 GAATCCACCCCTCAGCCTCAGCACAAGATGGAGAGTAGACTCCTTCTGGATATTGTAATC 85490499 Query 34219 GGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGAC 34278 | || | | || ||||||||||| || || || || |||| ||| ||||| Sbjct 85490498 AGCCAATGTCCTACCATCCTCCAACTGCTTCCCAGCAAAGATAAGCCTCTGTTGGTCCGG 85490439 Query 34279 GGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTC 34338 || | | |||||| || |||||| ||| | || | | |||| || | || Sbjct 85490438 TGGAATACCCTCCTTATCCTGTATCTTCGCCTTCACATTGTCAATCGTGTCTGAGCTCTC 85490379 Query 34339 GACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || |||| |||||||| || || || | |||||| || ||||| ||||| Sbjct 85490378 AACTTCCAGTGTGATGGTCTTTCCTGTTAAAGTTTTAACGAAGATTTGCAT 85490328 >seq1629 Length=244661 Score = 100 bits (110), Expect = 2e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || ||||| ||||| || || | |||| |||||||| || |||||||| | Sbjct 135056 TCCACCACGGAGCCTGAGCACGAGATGAAGAGTAGACTCTTTCTGGATATTGTAGTCTGC 134997 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 ||| ||| | || || | |||||| || || || || |||| |||||| || || Sbjct 134996 AAGCGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGATCTGGTGG 134937 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||| || ||||||| ||| | || | | || | ||| | || || Sbjct 134936 AATGCCTTCCTTATCCTGTATCTTTGCCTTCACATTGTCAATGGTATCTGAGCTCTCCAC 134877 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTC 34394 |||| ||||| || || || || | || |||||||||||||||||| ||| Sbjct 134876 CTCCAAGGTGATTGTCTTCCCAGTCAATGTCTTCACAAAGATCTGCATCCCTC 134824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322925550856640