Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq2 168 6e-37 >seq2 Length=96359640 Score = 168 bits (186), Expect = 6e-37 Identities = 575/890 (65%), Gaps = 17/890 (2%) Strand=Plus/Plus Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988 |||||||| || || ||||| || | ||||||||| ||||||||||| || || ||| Sbjct 42515538 GACATAACAGAAGCCTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCT 42515597 Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCAT 16048 | ||| ||| ||||| ||||||| ||||| | | | || | ||||| | Sbjct 42515598 TGTAAACTAATCAGCTCCATCCAATCAAACGGATTCTGAGCATTGTACAACTTATCATAA 42515657 Query 16049 CCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAG 16108 ||||| | ||| |||||||| ||||||||||| || || | |||| ||||| | Sbjct 42515658 CCCAAAGCATCCAACAATCTATCAGCCACAAATTCAATGTATTTGCTCATCAAATCTCCA 42515717 Query 16109 TTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACC 16168 |||||||| | | | ||| | || || | ||| | ||||||| | || Sbjct 42515718 TTCATTCCCACCAGCGCACAAGGCAGCGCGTCACACACAAACTCCCTTTCTATCTCCACA 42515777 Query 16169 GCTTC---AATGATTA---TATCTCTTACTACACTATTTAACGGAGGGTTTAATAAGTGT 16222 || || || ||| || ||| | | || || | | | |||| || Sbjct 42515778 GCATCTGCAACAATTCCCTTAACTCGTTCCTCAGTA---AGCTTCGTCCTTAACAAACTA 42515834 Query 16223 TTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTT 16282 | || || |||||| |||||||| ||||| || |||||||| ||||||||||| Sbjct 42515835 TAAAGCAA---ACAAGCGAAATCACAGTGCAAACCCTCGTCCCTTGAAATTAACTCGTTC 42515891 Query 16283 GAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAA 16342 || || || | || ||||||| || || ||||| | ||| |||||||| || Sbjct 42515892 GAGAAAGTTAATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAGCACAGAAGCTT 42515951 Query 16343 CCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTA 16402 ||||| || || |||||||| || |||||||||||||| ||||| | | ||| Sbjct 42515952 CCAGAGAAAAAAATACCTTCCACACAAGCAAATGCAACCAAACGCTCCGCAAATGTT--- 42516008 Query 16403 tttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTC 16462 | || || ||||| | ||||| || || || | | ||||||| || || Sbjct 42516009 TCGGAACCGTCGATCCAACGTAGTGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTC 42516068 Query 16463 TCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGT 16522 || | ||| ||||| ||||||| | || || || | |||| || Sbjct 42516069 TCAACTGCGCGGAATAATCTGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGC 42516128 Query 16523 AAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATA-AAAGCATCT 16581 | ||| ||||| || || || || || || || || || || || || || |||||| | Sbjct 42516129 AGACTGTACATCTCGGAGTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCA-CG 42516187 Query 16582 AGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCC 16641 || |||| | ||| ||||| |||||| | |||| |||||| ||| || || Sbjct 42516188 CGCCTCGGCAACTTGGACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCC 42516247 Query 16642 ATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAG 16701 ||| || |||||||| ||||| | ||| | || |||| |||| | || Sbjct 42516248 GTCGGAGGCGGCAAAAAAGGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGGGTTAG 42516307 Query 16702 TTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGC 16761 || ||||| | ||| ||||||||||| ||||| ||||||| ||||| || Sbjct 42516308 GGTTTCCCAGTGACGGTTATCGGAAGATAAATCGACTTCTTCAGCAGTCCAGAAAGAGGC 42516367 Query 16762 AACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACA 16811 | || ||||| ||||||| ||| || | | ||| ||| || |||| Sbjct 42516368 CAAGGCTTTTTTGTACATTTCCCAAATTTGTGGGTATTGAATTGGGAACA 42516417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462296966608400