Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq1 109 4e-19 seq12110 91.5 1e-13 seq1629 89.7 4e-13 seq6 86.0 5e-12 seq11 84.2 2e-11 seq1591 82.4 6e-11 >seq1 Length=110538649 Score = 109 bits (120), Expect = 4e-19 Identities = 165/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | ||| || | ||| || ||||| || |||||||| || || || || Sbjct 86551083 TCCACCACGAAGGCGAAGGACTAGGTGGAGCGTTGACTCCTTTTGAATATTATAATCTGC 86551142 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || || | |||||||||||| || || ||| | || || |||||||| ||| || Sbjct 86551143 CAGAGTGCGCCCATCTTCCAATTGCTTCCCAGCAAAAATCAGCCTTTGTTGGTCCGGTGG 86551202 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTC--- 18274 | ||||||||||| ||||| ||| || | ||| ||||| ||| |||| Sbjct 86551203 AATACCTTCCTTATCTTGAATTTTCGCCTTAACGTTATCAATAGTGT--CCGAGCTCTCA 86551260 Query 18275 GGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || |||| ||||| |||| || |||||||| || ||||| ||||||||| Sbjct 86551261 ACTTCCAAT-GTGATTGTTTTTCCAGTCAATGTCTTAACAAATATTTGCATT 86551311 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | ||| || | ||| |||||||| || ||||||||||| ||||| || Sbjct 85490327 TCCACCACGAAGGCGAAGGACTAGGTGGAGTGTTGACTCCTTTTGAATGTTATAGTCAGC 85490268 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | | |||||||||||||| || ||| | || || || || |||||| || Sbjct 85490267 AAGAGTCCTCCCGTCTTCCAATTGTTTCCCAGCAAAAATCAGCCTCTGCTGATCCGGTGG 85490208 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||| || ||||| ||| || | | | ||||| | ||| Sbjct 85490207 AATGCCTTCCTTGTCTTGAATTTTGGCCTTAACATTGTCTATCGTGTCCGAGCTCTCAAC 85490148 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | ||||| |||| || || || || || ||||| ||||||||| Sbjct 85490147 TTCCAACGTGATTGTTTTTCCAGTTAAGGTCTTAACAAAGATTTGCATT 85490099 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | ||| || | ||| |||||||| || |||||||| ||||| || || Sbjct 85489643 TCCACCACGGAGACGAAGAACAAGGTGGAGTGTTGACTCCTTTTGAATATTGTAATCCGC 85489584 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | ||| || | ||||| || ||| |||| | | ||||||||| || Sbjct 85489583 GAGAGTACGCCCATCCTCGAGCTGTTTTCCTGCAAAGATCAAACGTTGTTGATCTGGTGG 85489524 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGC--TCG 18275 | ||||||||||| |||| ||| || | ||| |||| ||| || ||| Sbjct 85489523 AATACCTTCCTTATCTTGGATTTTGGCCTTAACATTATCAATCGTGT--CCGAGCTTTCG 85489466 Query 18276 GTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | ||||| |||| || ||||| ||||| ||||||| ||||||| Sbjct 85489465 ACTTCCAATGTGATTGTTTTTCCAGTCAAGGTTTTAACAAAAACTTGCATT 85489415 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || |||| | ||| || || | |||||| || ||||| || || ||||| || || ||| Sbjct 85489870 CCGCCCCTCAATCTGAGAACAAGGTGAAGGGTGGATTCCTTCTGGATGTTATAATCAGCC 85489811 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCC-ACGGG 18217 | ||| | |||||| ||||| || || ||| | || || || || || || ||||| Sbjct 85489810 AGAGTTCGTCCATCTTCTAATTGCTTCCCAGCAAAAATCAGCCTCTGCTGGTCTGACGGG 85489751 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||||| |||| ||| || | ||| ||||| | ||| Sbjct 85489750 -ATACCTTCCTTATCTTGGATTTTCGCCTTAACATTATCAATTGTGTCCGAGCTCTCAAC 85489692 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | || ||| |||| ||||| || ||||| | ||| ||||||||| Sbjct 85489691 TTCTAATGTAATGGTTTTCCCGGTTAAGGTTTTAATAAAGATTTGCATT 85489643 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 18097 ATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGG 18156 |||| |||| | || || || | || || || || || || || || |||||||| | Sbjct 86550400 ATCCACCCCTCAACCTCAGCACAAGATGGAGCGTAGACTCCTTCTGGATATTGTAGTCTG 86550459 Query 18157 CCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGG 18216 ||| ||| ||| ||| ||||| ||||| || ||| |||| || || || || || | Sbjct 86550460 CCAGTGTCCTACCATCCTCCAACTGTTTTCCAGCAAAGATGAGCCTCTGCTGGTCGGGCG 86550519 Query 18217 GCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | | ||||||||||| || | ||| || | ||| ||||| | ||| Sbjct 86550520 GAATACCTTCCTTATCCCGTATCTTCGCCTTCACATTGTCAATCGTGTCTGAGCTCTCAA 86550579 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | |||||| |||| || || || ||||| ||||| ||||||||| Sbjct 86550580 CTTCTAATGTGATGGTTTTTCCCGTTAAGGTTTTAACAAAGATTTGCATT 86550629 >seq12110 Length=10092 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| || || | || | |||||| ||||||||||| ||||||||||| || || Sbjct 4421 TCCTCCCCTGAGCCTCAAAACAAGGTGAAGAGTTGATTCTTTCTGAATGTTGTAATCAGC 4480 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || || | ||||||||| ||||| || ||| | || ||||| || ||||| || Sbjct 4481 CAGGGTCCGCCCATCTTCCAACTGTTTCCCAGCAAAAATCAGTCTCTGCTGATCAGGAGG 4540 Query 18218 CACGCCTTCCTTATC 18232 | |||||| ||||| Sbjct 4541 TATGCCTTCTTTATC 4555 >seq1629 Length=244661 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || || | |||||| || || || || || ||||||||||| || | ||| ||| |||| Sbjct 134356 AGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTTCTACCATCT 134297 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | ||| ||||| ||| | || | ||||||||||| || | || |||||||| Sbjct 134296 TCAAGTTGCTTGCCAGCAAAAATCAACCTTTGTTGATCAGGAGGAATACCCTCCTTATCC 134237 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | | |||||| | ||| ||||| | |||| |||| || || | Sbjct 134236 TGGATCTTTGCCTTGACATTGTCAATGGTGTCTGAGCTCTCGACCTCAAGAGTAATAGTC 134177 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || ||||||| ||||| ||||| |||||||| Sbjct 134176 TTTCCGGTCAGAGTTTTAACAAAGATTTGCAT 134145 >seq6 Length=97571839 Score = 86.0 bits (94), Expect = 5e-12 Identities = 176/259 (68%), Gaps = 2/259 (1%) Strand=Plus/Minus Query 18068 AAAAATTAAAAATACATTTTCTTTTTGTTATCCTCCCCGTAGTCTAAGTACCATGTGAAG 18127 ||||||| | | || | ||||| | || ||||| || || | | || | || || Sbjct 19649590 AAAAATTGGATAAACTTCTTCTTCTCTATAACCTCCACGAAGACGCAACACAAGATGGAG 19649531 Query 18128 TGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCC 18187 || ||||| || |||||||| || || | || |||| || |||||| | |||||| || Sbjct 19649530 AGTGGATTCCTTCTGAATGTTATAATCAGTCAGTGTTCGACCATCTTCAAGTTGTTTTCC 19649471 Query 18188 CGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTT 18247 ||| | || | ||||||||||| || | ||||| || || ||||| ||| || Sbjct 19649470 AGCAAAAATTAACCTTTGTTGATCTGGAGGAATTCCTTCTTTGTCTTGAATTT-TTGTTT 19649412 Query 18248 GACCTGTG-CAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATG 18306 | | || ||| ||||||| | ||| |||| || ||| | || || || | || Sbjct 19649411 TAACATTGTCAATGGTGTCACAGCTCTCAACCTCAAGTGTAATGGTCTTTCCTGTGAGTG 19649352 Query 18307 TTTTTACAAAAATTTGCAT 18325 | || ||||| |||||||| Sbjct 19649351 TCTTAACAAAGATTTGCAT 19649333 >seq11 Length=61252062 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| || || | |||| |||||||||||||||||| || || ||||| || || Sbjct 13809912 TCCTCCCCTGAGCCTCAAAACCAGGTGAAGTGTTGATTCTTTCTGGATATTGTAATCAGC 13809853 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATC 18211 || ||| || ||||||||| ||||| || ||| | || | || || ||||| Sbjct 13809852 CAGAGTTCGACCATCTTCCAACTGTTTTCCAGCAAAAATCAACCTCTGCTGATC 13809799 >seq1591 Length=249109 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| || || || |||| ||| | || || || ||||||||||||||||| || Sbjct 29263 TCCTCCCCTCAGCCTCAGCACCAAGTGCAAGGTGGACTCCTTTTGAATGTTGTAGTCTGC 29204 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || || ||||||||| || || || ||| |||| || || || || || ||| Sbjct 29203 AAGGGTGCGACCATCTTCCAACTGCTTTCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGG 29144 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || ||||| || || | |||||| | ||| ||||||| || Sbjct 29143 AATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATAGTGTCAGAACTTTCAAC 29084 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| | |||||||| | ||||| || || || ||||| Sbjct 29083 CTCCAGGGTGATGGTCTTGCCGGTGAGGGTTTTGACGAAGATCTGCAT 29036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379172042653530