Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq1898 87.8 2e-12 >seq1898 Length=217218 Score = 87.8 bits (96), Expect = 2e-12 Identities = 162/233 (70%), Gaps = 10/233 (4%) Strand=Plus/Plus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 ||||||||| ||||||||||| ||||| ||||| ||||| ||| | || || || ||| Sbjct 78414 CATGCAGATTTTTGTTAAAACTTTAACGGGCAAGACGATCACCCTTGAAGTTGA---GAG 78470 Query 24891 C---GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTA--CCGGTT 24945 | || | || || | ||| |||| ||| | | | | | ||| ||| ||| || Sbjct 78471 CTCAGATACCGTCGACAATGTAAAGGCAAAGA-TCCAGGACAAGGAGG-GTATTCCTCCA 78528 Query 24946 GACCAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGAT 25005 |||||||| | || |||| ||| || |||||||| || ||| | ||| | ||| Sbjct 78529 GACCAGCAGAGGTTGATATTTGCTGGGAAACAACTCGAGGATGGAAGGACCCTTGCAGAT 78588 Query 25006 TACAGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 |||| || ||||| || | || |||||||| ||| | || || | ||||| Sbjct 78589 TACAATATTCAGAAGGAATCAACCCTTCATTTGGTGCTTCGTCTGAGGGGAGG 78641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418114382012480