Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2 185 1e-41 seq155 82.4 1e-10 >seq2 Length=96359640 Score = 185 bits (204), Expect = 1e-41 Identities = 566/872 (65%), Gaps = 10/872 (1%) Strand=Plus/Plus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 || || || || || || | || || || |||||||| || |||| || || Sbjct 42515553 TTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAGC 42515612 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410 ||||| ||||||||||||| | ||||||| | || | | | ||||| || | | Sbjct 42515613 TCCATCCAATCAAACGGATTCTGAGCATTGTACAACTTATCATAACCCAAAGCATCCAAC 42515672 Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGT 33470 |||||||| || || ||||| || ||| | |||||| || | ||||||||| | || Sbjct 42515673 AATCTATCAGCCACAAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAGC 42515732 Query 33471 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATA 33530 | || || || || | ||| || ||| || || |||| || | ||| Sbjct 42515733 GCACAAGGCAGCGCGTCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAATT 42515792 Query 33531 AATCTAACGGTTTCTTCACTCGG--TGGATGTAATAAATGTTTAAACATCAAACATGCGA 33588 |||| ||| ||| | | | | | | || | |||| |||||| |||| Sbjct 42515793 CCCTTAACTCGTTCCTCAGTAAGCTTCGTCCTTAACAAACTATAAAG--CAAACAAGCGA 42515850 Query 33589 AATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCA 33648 |||| ||||||| ||||||||| || |||||| ||||| || || || | ||| |||| Sbjct 42515851 AATCACAGTGCAAACCCTCGTCCCTTGAAATTAACTCGTTCGAGAAAGTTAATCCAGGCA 42515910 Query 33649 TTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTT 33708 ||| || |||||||| | ||| ||||| | | ||| ||| || || || || |||| Sbjct 42515911 TTAACCCCCGCTTTTTTAACCAGAATATAGCACAGAAGCTTCCAGAGAAAAAAATACCTT 42515970 Query 33709 CTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCATGTATCCACT 33765 | || |||||| |||| | | ||| || | ||| | ||| ||||| Sbjct 42515971 CCACACAAGCAAATGCAACCAAACGCTCCGCAAATGTTTCGGAACCGTCG---ATCCAAC 42516027 Query 33766 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 33825 | | ||||| | |||||||| | ||||| || || || || | || || | Sbjct 42516028 GTAGTGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCGCGGAATAATC 42516087 Query 33826 AGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAAT 33885 | ||||||| | | || || | || | || | | ||||| ||||| || || | Sbjct 42516088 TGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACTGTACATCTCGGAGT 42516147 Query 33886 GAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTT 33945 | ||||||||||| || || || || ||||||||| | ||||||| || || |||| Sbjct 42516148 GGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGCGCCTCGGCAACTTGGACTT 42516207 Query 33946 CTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACG 34005 || | || | | | |||| ||||| || || || || ||| |||||||| | Sbjct 42516208 CTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCGGAGGCGGCAAAAAAGG 42516267 Query 34006 CCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATAT 34065 | | || || | || |||| |||| | || ||||| | | ||| | | | ||| Sbjct 42516268 CAAGGACGTGAGTGATGAAATGCCTTTCACCGGGGGTTAGGGTTTCCCAGTGACGGTTAT 42516327 Query 34066 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 34125 | ||||| ||| |||||||| | ||||| || || ||| || ||||| ||||| | Sbjct 42516328 CGGAAGATAAATCGACTTCTTCAGCAGTCCAGAAAGAGGCCAAGGCTTTTTTGTACATTT 42516387 Query 34126 TCCAGATGTCATGATATTGGATTGGGAAAATA 34157 ||| || | | ||||| |||||||| ||| Sbjct 42516388 CCCAAATTTGTGGGTATTGAATTGGGAACATA 42516419 >seq155 Length=843148 Score = 82.4 bits (90), Expect = 1e-10 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 |||||| ||||||||||| || ||||| || || || |||||| || ||| | | || Sbjct 128082 AGTTCCAGCATTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTGAGACATCAAATG 128141 Query 63722 GTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTA 63780 || || | || || || || ||||| | ||| ||||| || || | || | ||||| Sbjct 128142 ATATGTTTTGATGGCAGATTCAATATCATCCTTG-TGAATACCAACAGATACTCTCATTA 128200 Query 63781 ACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63840 |||||| || || ||||| |||| ||| | || || || | ||| || | || | Sbjct 128201 GCATGTGTTGTGGCCTTTCTACAACTTTACCCTGAATCTTTAAGAGGTAAGACCTCTCAA 128260 Query 63841 AAGTTTTAAAACCAAAATA 63859 ||||| |||||||| || Sbjct 128261 GGGTTTTGAAACCAAAGTA 128279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629524782052320