Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq155 131 2e-25 seq460 104 2e-17 >seq155 Length=843148 Score = 131 bits (144), Expect = 2e-25 Identities = 137/179 (77%), Gaps = 2/179 (1%) Strand=Plus/Plus Query 38383 ATAAAACAACTAGACAT--TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATG 38440 |||||| | | ||||| |||||| ||||||||| || ||||||||||| ||||||| Sbjct 128051 ATAAAAAAGGTTGACATACTTGAGGTCTTGGAGTTCCAGCATTAAATAATGTTGGAGATG 128110 Query 38441 CATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCAC 38500 |||| |||||||| || |||| ||| |||||||| || || || |||||| Sbjct 128111 CATGAGTGAACCATCGTTGAGACATCAAATGATATGTTTTGATGGCAGATTCAATATCAT 128170 Query 38501 CGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTA 38559 | ||||||||| | |||||| ||||||||||| |||||||| ||||||| | |||| Sbjct 128171 CCTTGTGAATACCAACAGATACTCTCATTAGCATGTGTTGTGGCCTTTCTACAACTTTA 128229 >seq460 Length=501829 Score = 104 bits (114), Expect = 2e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 38400 TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTC 38459 ||||||| ||||||||| |||||||| | || ||||| ||||| |||||||| ||| Sbjct 289298 TTGAGGCCTTGGAGTTCCAGCGTTAAAAAGAGTTGGAGAGGCATGAGTGAACCATCTTTG 289239 Query 38460 CGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGA 38519 |||| ||| ||| |||| || || || |||||| | ||| || || | ||| Sbjct 289238 AGACATCAAATGATAAGTTTTGATGGCAGATTCAATATCATCCTTGTGGATCCCAACAGA 289179 Query 38520 TACCCTCATTAGCATATGTTGTGGTCTTTCTA 38551 || ||||| |||||||||||||| ||||||| Sbjct 289178 AACTCTCATCAGCATATGTTGTGGCCTTTCTA 289147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468306971107360