Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1591 107 2e-18 seq6 105 7e-18 seq854 104 2e-17 seq1629 96.9 3e-15 seq12110 91.5 1e-13 seq8 89.7 5e-13 seq1 89.7 5e-13 seq1898 86.0 6e-12 >seq1591 Length=249109 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||| | || ||||||| |||||||| || || || || |||||| Sbjct 28578 CCACCTCGGAGACGGAGGACCAAGTGAAGGGTAGACTCCTTCTGGATATTGTAATCGGCG 28519 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||| || ||||| || || || |||| || | ||||||||| || || Sbjct 28518 AGGGTACGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATAAGCCTTTGCTGATCTGGGGGA 28459 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| |||||| ||||| | || | |||||||| ||| ||| Sbjct 28458 ATTCCTTCTTTGTCCTGGATTTTGGCTTTTACGTTGTCGATTGTGTCGGAACTCTCGACC 28399 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | ||||| ||||| | ||||| ||||| || ||||| Sbjct 28398 TCAAGAGTGATGGTCTTTCCGGTTAGGGTTTTCACGAAGATCTGCAT 28352 >seq6 Length=97571839 Score = 105 bits (116), Expect = 7e-18 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || | || | || || || || |||||||||||||| || Sbjct 19649559 CCTCCACGAAGACGCAACACAAGATGGAGAGTGGATTCCTTCTGAATGTTATAATCAGTC 19649500 Query 139598 ATTGTGCTCGAG--TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 | ||| |||| ||||| || ||||| |||||| | || | | ||| ||||| |||| Sbjct 19649499 AGTGT--TCGACCATCTTCAAGTTGTTTTCCAGCAAAAATTAACCTTTGTTGATCTGGAG 19649442 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCC 139714 | || ||||||||||| ||| ||||||||||| | | || | ||||| | ||| Sbjct 19649441 GAATTCCTTCTTTGTC-TTGAATTTTTGTTTTAACATTGTCAATGGTGTCACAGCTCTCA 19649383 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||| || | ||||| || || | || || || || |||||||| Sbjct 19649382 ACCTCAAGTGTAATGGTCTTTCCTGTGAGTGTCTTAACAAAGATTTGCAT 19649333 >seq854 Length=364260 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || | ||||| || ||||| || || ||||| || ||| Sbjct 69723 CCACCACGCAGACGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCA 69664 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| | || || ||||| || |||||| |||||| | |||||||| ||||| Sbjct 69663 AGAGTGCGCCCATCCTCAAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGAGGG 69604 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||||||||| ||| || || | | || | ||||||| | ||| ||| Sbjct 69603 ATGCCTTCTTTGTCCTGGATCTTCGCCTTAACATTGTCAATGGTGTCGGAGCTCTCAACC 69544 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | ||||| || ||||| ||||| || || || ||||| Sbjct 69543 TCAAGGGTGATGGTCTTCCCAGTCAAAGTTTTCACAAAAATCTGCAT 69497 >seq1629 Length=244661 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| | ||| | ||| | ||| | || |||||||| |||||||| ||||| Sbjct 134600 GCCACCTCTAAGACGAAGAACAAGGTGCAGGGTTGACTCTTTCTGAATGTTGTAATCTGC 134541 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || ||| ||| ||| || || || || || ||| ||||||| | ||||| || ||||| Sbjct 134540 CAATGTCCTCCCGTCCTCAAGTTGCTTCCCGGCAAAGATCAGTCTCTGCTGGTCTGGAGG 134481 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| ||| ||| | | || | || || | || || Sbjct 134480 AATACCTTCCTTGTCTTGGATCTTTGCTTTAACATTGTCGATGGTATCTGAACTTTCAAC 134421 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | ||||||||||| | ||| || || || || ||||| Sbjct 134420 TTCAAGGGTGATTGTCTTGCCGGTAAGCGTCTTGACAAAGATCTGCAT 134373 Score = 82.4 bits (90), Expect = 8e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 |||||||| || || || | || ||||| || || |||||||| || | || || Sbjct 134818 AAACGCAAGACCAAATGGAGAGTCGACTCCTTCTGGATGTTATAGTCCGCAAGAGTCCTG 134759 Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666 ||| || | ||||||||||||| |||||| ||| ||||| || || || || || || Sbjct 134758 CCGTCCTCCAACTGTTTACCAGCAAAGATCAAACGCTGCTGGTCTGGCGGGATACCCTCC 134699 Query 139667 TTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTC 139726 ||||| ||| ||| ||| | | || | || || | ||| ||||| | || Sbjct 134698 TTGTCTTGGATCTTTGCTTTGACATTGTCAATGGTATCAGAACTCTCAACCTCCAAAGTT 134639 Query 139727 ACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | ||||| || ||||| || || || || || ||||| Sbjct 134638 ATTGTCTTCCCAGTCAAAGTCTTGACAAAAATCTGCAT 134601 >seq12110 Length=10092 Score = 91.5 bits (100), Expect = 1e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 |||||| | ||||| || || ||||| |||||||| ||||| || || | | || Sbjct 4436 CAAAACAAGGTGAAGAGTTGATTCTTTCTGAATGTTGTAATCAGCCAGGGTCCGCCCATC 4495 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| | |||||| |||||| | ||||| | |||||||| ||||||||||||||||| || Sbjct 4496 TTCCAACTGTTTCCCAGCAAAAATCAGTCTCTGCTGATCAGGAGGTATGCCTTCTTTATC 4555 >seq8 Length=47755514 Score = 89.7 bits (98), Expect = 5e-13 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC-GCTCATTGTGCTCGAGTCTTC 139614 || ||||||| |||||||| || || ||||| ||||| ||| | || || |||||| Sbjct 5427312 ACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCAGCT-AGGGTTCTGCCGTCTTC 5427370 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 |||||| || || ||| |||||| | ||||| || || || || ||||| || || | Sbjct 5427371 GAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGGATTCCTTCCTTATC-CT 5427429 Query 139675 GATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733 || | || | ||| | | || | ||||||| | || ||||||| ||| | || | Sbjct 5427430 GAATCTTAGCCTTAACGTTGTCAATAGTGTCGGAGCTTTCAACCTCAAGGGTGATTGTTT 5427489 Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | || || | ||||| ||||| || |||||| Sbjct 5427490 TCCCAGTTAGGGTTTTGACGAAGATCTGCATA 5427521 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||| | || ||||||| || ||||| || || ||||| || ||| Sbjct 5427522 CCGCCACGAAGACGGAGCACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCT 5427581 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || |||||||||||| || || || |||||| | ||||| || || || Sbjct 5427582 AGGGTTCTGCCGTCTTCGAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGCGGG 5427641 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| || || ||| | || | || | | || | |||||||| | || || Sbjct 5427642 ATTCCTTCCTTATC-CTGAATCTTAGCCTTGACGTTGTCAATTGTGTCGGAGCTTTCAAC 5427700 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | |||||| || || | ||||| ||||| || ||||| Sbjct 5427701 CTCAAGGGTTATCGTCTTTCCAGTTAGGGTTTTGACGAAGATCTGCAT 5427748 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC-GCT 139596 || || || | ||| | || || |||| || ||||| || ||||| || ||||| ||| Sbjct 5427066 CCACCACGAAGACGGAGCACCAAATGAAGGGTGGACTCCTTCTGAATATTGTAATCAGCT 5427125 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || || ||||| | ||||||||||||| |||||| | |||||||| || || Sbjct 5427126 AAA-GTCCTTCCATCTTCCAACTGTTTACCAGCAAAGATCAACCTCTGCTGATCTGGTGG 5427184 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || || || ||||| ||| | || | || | | || | |||||||| | || | Sbjct 5427185 GATTCCCTCCTTGTC-CTGAATCTTAGCCTTGACGTTGTCAATTGTGTCGGAGCTTTCGA 5427243 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | |||| ||| | || || ||||||||||| || || || || ||||| Sbjct 5427244 CTTCAAGGGTGATTGTTTTCCCGGTCAACGTCTTCACAAAAATCTGCAT 5427292 >seq1 Length=110538649 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| ||| | ||| | ||| | || ||||| ||||||||||||||||| Sbjct 86551312 CCACCACGTAGACGAAGAACAAGGTGGAGAGTTGACTCCTTTTGAATGTTATAATCAGCG 86551371 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | || || || ||||| || ||| |||||| |||||| ||||| || || Sbjct 86551372 AGAGTCCGTCCA-TCCTCAAGTTGTTTTCCTGCAAAGATCAAACGTTGTTGATCTGGTGG 86551430 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| |||||| ||| | | || | |||| | ||| || Sbjct 86551431 AATACCTTCTTTGTCCTGGATTTTCGCTTTAACATTGTCGATCATGTCTGAACTCTCAAC 86551490 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | |||||||| || | || ||||| || || ||||| Sbjct 86551491 TTCGAGAGTTATAGTCTTGCCAGTAAGAGTCTTTACAAAGATCTGCAT 86551538 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || || || || ||||| |||||| | |||||||| ||||| ||||||||||| Sbjct 14110118 TCCTCAAGTTGCTTTCCAGCGAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTA 14110059 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || |||||| ||| | | || | ||| |||| ||| ||||||| ||| | Sbjct 14110058 TCCTGGATTTTAGCTTTGACATTGTCAATTGTATCGGAACTCTCAACCTCAAGGGTAATA 14109999 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| || ||||| |||||||| || || |||||| Sbjct 14109998 GTCTTTCCTGTCAAAGTTTTTACAAAGATCTGCATA 14109963 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 |||| ||| | || ||||| |||||||||||||| || | || ||| |||||| Sbjct 85490308 ACTAGGTGGAGTGTTGACTCCTTTTGAATGTTATAGTCAGCAAGAGTCCTCCCGTCTTCC 85490249 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | ||||| |||||| | ||||| | |||||||| || || |||||||| ||||| || Sbjct 85490248 AATTGTTTCCCAGCAAAAATCAGCCTCTGCTGATCCGGTGGAATGCCTTCCTTGTC-TTG 85490190 Query 139676 ATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 | |||| | ||| | | || | ||||| | | ||| || || | || | || || Sbjct 85490189 AATTTTGGCCTTAACATTGTCTATCGTGTCCGAGCTCTCAACTTCCAACGTGATTGTTTT 85490130 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || || || || || || |||||||| Sbjct 85490129 TCCAGTTAAGGTCTTAACAAAGATTTGCAT 85490100 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 |||| ||| | ||| ||||| |||||||| |||||||| || |||| | ||||| Sbjct 86551102 ACTAGGTGGAGCGTTGACTCCTTTTGAATATTATAATCTGCCAGAGTGCGCCCATCTTCC 86551161 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | || || |||||| | ||||| | ||| || || || || || ||||| || || || Sbjct 86551162 AATTGCTTCCCAGCAAAAATCAGCCTTTGTTGGTCCGGTGGAATACCTTCCTTATCT-TG 86551220 Query 139676 ATTTTTTGTTTTAGCTGTTCCACT-GTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 | |||| | ||| | | || | ||||| | | ||| || || | || | || || Sbjct 86551221 AATTTTCGCCTTAACGTTATCAATAGTGTCCGAGCTCTCAACTTCCAATGTGATTGTTTT 86551280 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || ||||| || || || ||||||||||| Sbjct 86551281 TCCAGTCAATGTCTTAACAAATATTTGCAT 86551310 >seq1898 Length=217218 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 |||||||| || | |||| || ||||| || || ||||||||||| | ||| || Sbjct 78860 AAACGCAACACCAGATGAAGTGTCGACTCCTTCTGTATGTTATAATCAGCAAGTGTCCTT 78801 Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666 ||||| || || || || ||| | |||| || ||||| || || || || ||||| Sbjct 78800 CCATCTTCAAGTTGCTTCCCTGCAAATATCAACCGCTGCTGGTCTGGGGGAATCCCTTCC 78741 Query 139667 TTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGT 139725 ||||| ||| |||| | || | | || | |||||| | ||| ||||| | ||| Sbjct 78740 TTGTC-TTGAATTTTGGCCTTCACGTTATCAATTGTGTCTGAACTCTCAACCTCCAAGGT 78682 Query 139726 CACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || || || ||||| || || ||||| |||||||| Sbjct 78681 GATAGTTTTTCCTGTCAAAGTCTTGACGAAGATTTGCAT 78643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495833367444800