Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2 190 3e-43 seq155 86.0 9e-12 >seq2 Length=96359640 Score = 190 bits (210), Expect = 3e-43 Identities = 568/871 (65%), Gaps = 8/871 (1%) Strand=Plus/Plus Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728 || || || || || || | || || || |||||||| || |||| || || Sbjct 42515553 TTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAGC 42515612 Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 49788 ||||| ||||||||||||| | |||| || | || | | | ||||| || | | Sbjct 42515613 TCCATCCAATCAAACGGATTCTGAGCATTGTACAACTTATCATAACCCAAAGCATCCAAC 42515672 Query 49789 AATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 49848 |||||||| || |||||||| || ||| | |||||| || | ||||||||| | || Sbjct 42515673 AATCTATCAGCCACAAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAGC 42515732 Query 49849 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 49908 | || || || || | ||| || ||| || || ||||||| | ||| Sbjct 42515733 GCACAAGGCAGCGCGTCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAATT 42515792 Query 49909 GATCTAACGGTTTCTTCACTCGG-TGGATGC--AATAAATGTTTAAACATCAAACATGCG 49965 |||| ||| ||| | | | | | || ||| || | | |||||| ||| Sbjct 42515793 CCCTTAACTCGTTCCTCAGTAAGCTTCGTCCTTAACAAAC---TATAAAGCAAACAAGCG 42515849 Query 49966 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGC 50025 ||||| ||||||| ||||||||| || ||||| ||||| || || || | ||| ||| Sbjct 42515850 AAATCACAGTGCAAACCCTCGTCCCTTGAAATTAACTCGTTCGAGAAAGTTAATCCAGGC 42515909 Query 50026 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCAGAAAAGAAGATTCC 50084 |||| || |||||||| | ||| ||||| | | || | | ||||| || || || || Sbjct 42515910 ATTAACCCCCGCTTTTTTAACCAGAATATAG-CACAGAAGCTTCCAGAGAAAAAAATACC 42515968 Query 50085 TTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTATCCACTT 50144 ||| || ||||| ||||| | | ||| || | | || | | ||||| Sbjct 42515969 TTCCACACAAGCAAATGCAACCAAACGCTCCGCAAATGTTTCGGAACCGTCGATCCAACG 42516028 Query 50145 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 50204 | | ||||| | |||||||| | ||||| || || || || | || || | Sbjct 42516029 TAGTGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCGCGGAATAATCT 42516088 Query 50205 GtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATG 50264 | ||||||| | | || || | || | || | | ||||| ||||| || || || Sbjct 42516089 GCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACTGTACATCTCGGAGTG 42516148 Query 50265 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTC 50324 ||||||||||| || || || || ||||||||| | ||||||| || || ||||| Sbjct 42516149 GATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGCGCCTCGGCAACTTGGACTTC 42516208 Query 50325 TGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 50384 | | || | | | |||| ||||| || || ||||| ||| |||||||| || Sbjct 42516209 TTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCGGAGGCGGCAAAAAAGGC 42516268 Query 50385 CAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATC 50444 | || || | || ||||| |||| ||| ||||| | | ||| | | | |||| Sbjct 42516269 AAGGACGTGAGTGATGAAATGCCTTTCACCGGGGGTTAGGGTTTCCCAGTGACGGTTATC 42516328 Query 50445 TTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATT 50504 ||||| ||| |||||||| | ||||| || || ||| || ||||| ||||| | Sbjct 42516329 GGAAGATAAATCGACTTCTTCAGCAGTCCAGAAAGAGGCCAAGGCTTTTTTGTACATTTC 42516388 Query 50505 CCAGATGTCATGATATTGGATTGGGAAAATA 50535 ||| || | | ||||| |||||||| ||| Sbjct 42516389 CCAAATTTGTGGGTATTGAATTGGGAACATA 42516419 >seq155 Length=843148 Score = 86.0 bits (94), Expect = 9e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 |||||| ||||||||||| || ||||| || || || |||||| || ||||| | || Sbjct 128082 AGTTCCAGCATTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTGAGACATCAAATG 128141 Query 80394 GTACGTCTCAATAGCTGATTCTATATC-CCATTGATGAATTCCTACCGCGACACGCATTA 80452 || || | || || ||||| ||||| | ||| ||||| || || | || | ||||| Sbjct 128142 ATATGTTTTGATGGCAGATTCAATATCATCCTTG-TGAATACCAACAGATACTCTCATTA 128200 Query 80453 ACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCA 80512 |||||| || || ||||| || | || | || || || | |||||| | || | Sbjct 128201 GCATGTGTTGTGGCCTTTCTACAACTTTACCCTGAATCTTTAAGAGGTAAGACCTCTCAA 128260 Query 80513 AAGTTTTAAAACCAAAATA 80531 ||||| |||||||| || Sbjct 128261 GGGTTTTGAAACCAAAGTA 128279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717934858878160