Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq8 102 6e-17 seq1629 86.0 5e-12 seq1591 86.0 5e-12 >seq8 Length=47755514 Score = 102 bits (112), Expect = 6e-17 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||||||||| | ||| |||||| || | ||||||||| | Sbjct 5427066 CCACCACGAAGACGGAGCACCAAATGAAGGGTGGACTCCTTCTGAATATTGTAATCAGCT 5427125 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | | | || ||||| ||||| || ||||| ||||| | ||| ||||| | || Sbjct 5427126 AAAGTCCTTCCATCTTCCAACTGTTTACCAGCAAAGATCAACCTCTGCTGATCTGGTGGG 5427185 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCT-CGA 43060 | || || || || |||| || | ||||| || ||| ||||||| ||| | ||| Sbjct 5427186 ATTCCCTCCTTGTC-CTGAATCTTAGCCTTGACGTTGTCAATTGTGTCGG-AGCTTTCGA 5427243 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || ||||| ||||| | || ||||||||||| ||||| Sbjct 5427244 CTTCAAGGGTGATTGTTTTCCCGGTCAACGTCTTCACAAAAATCTGCAT 5427292 >seq1629 Length=244661 Score = 86.0 bits (94), Expect = 5e-12 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 42955 TCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTT 43014 || || | ||| ||||| ||||||||||| | |||||||| | || | ||| || || Sbjct 134299 TCTTCAAGTTGCTTGCCAGCAAAAATCAACCTTTGTTGATCAGGAGGAATACCCTCCTTA 134240 Query 43015 TCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTAT 43073 || |||| | ||||| || ||| ||||| ||| |||||| || | || || Sbjct 134239 TCCTGGATCTTTGCCTTGACATTGTCAATGGTGTC-TGAGCTCTCGACCTCAAGAGTAAT 134181 Query 43074 AGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||| |||||||| |||||||| ||||| |||||||| Sbjct 134180 AGTCTTTCCGGTCAGAGTTTTAACAAAGATTTGCAT 134145 >seq1591 Length=249109 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 |||||| || | ||||||||||| | ||||| |||| || | || |||||||| || Sbjct 28543 CTCCTTCTGGATATTGTAATCGGCGAGGGTACGGCCGTCCTCAAGCTGCTTGCCGGCGAA 28484 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 || | | || ||||| | || | |||||||| || ||| |||| || | Sbjct 28483 GATAAGCCTTTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGGATTTTGGCTTTTACGTT 28424 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 | | | ||||||| | |||||| || | || || || ||||||||||| |||||||| Sbjct 28423 GTCGATTGTGTCGGAACTCTCGACCTCAAGAGTGATGGTCTTTCCGGTTAGGGTTTTCAC 28364 Query 43098 AAAAATTTGCAT 43109 || || ||||| Sbjct 28363 GAAGATCTGCAT 28352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381196724445252