Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq6 105 7e-18 seq12110 87.8 2e-12 seq1898 87.8 2e-12 seq1629 87.8 2e-12 seq1 82.4 8e-11 >seq6 Length=97571839 Score = 105 bits (116), Expect = 7e-18 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | |||||| || | ||| | || ||||| || || ||||| ||||| || Sbjct 19649559 CCTCCACGAAGACGCAACACAAGATGGAGAGTGGATTCCTTCTGAATGTTATAATCAGTC 19649500 Query 143018 ATTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 | ||| |||| ||||| |||||||| |||||| | || | | ||| ||||| |||| Sbjct 19649499 AGTGT--TCGACCATCTTCAAGTTGTTTTCCAGCAAAAATTAACCTTTGTTGATCTGGAG 19649442 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGC-TGTTCCACCGTGTCCGTGGGTTCT 143134 | || ||||||||||| | | ||||||||||| | | || | ||||| | || Sbjct 19649441 GAATTCCTTCTTTGTC-TTGAATTTTTGTTTTAACATTGTCAATGGTGTCACAGCTCTCA 19649383 Query 143135 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || |||| || | ||||| || || | ||| || || || |||||||| Sbjct 19649382 ACCTCAAGTGTAATGGTCTTTCCTGTGAGTGTCTTAACAAAGATTTGCAT 19649333 >seq12110 Length=10092 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 |||||| | |||| || |||||||| || ||||||||||| || || | | || Sbjct 4436 CAAAACAAGGTGAAGAGTTGATTCTTTCTGAATGTTGTAATCAGCCAGGGTCCGCCCATC 4495 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||| | ||||| |||||| | ||||| | |||||||| ||||||||||||||||| || Sbjct 4496 TTCCAACTGTTTCCCAGCAAAAATCAGTCTCTGCTGATCAGGAGGTATGCCTTCTTTATC 4555 Query 143092 --GGTAA 143096 ||||| Sbjct 4556 CTGGTAA 4562 >seq1898 Length=217218 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| | | ||| | || ||||||| || ||||| || || || |||||||| Sbjct 78642 GCCTCCCCTCAGACGAAGCACCAAATGAAGGGTTGATTCCTTCTGAATATTGTAATCTGC 78583 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || || || ||||||||||| |||||| | |||| | ||||| || ||||| Sbjct 78582 AAGGGTCCTTCCATCCTCGAGTTGTTTCCCAGCAAATATCAACCTCTGCTGGTCTGGAGG 78523 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || || ||||| || ||| |||| | || || || || | | || || Sbjct 78522 AATACCCTCCTTGTCCTGGATCTTTGCCTTTACATTGTCGACGGTATCTGAGCTCTCAAC 78463 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| || | ||||||||| || || ||||| || || || ||||| Sbjct 78462 TTCAAGGGTGATCGTCTTGCCCGTTAAAGTTTTAACAAAAATCTGCAT 78415 >seq1629 Length=244661 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| |||| | ||| | ||| | || | || || ||||| || ||||||||||| Sbjct 134600 GCCACCTCTAAGACGAAGAACAAGGTGCAGGGTTGACTCTTTCTGAATGTTGTAATCTGC 134541 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || ||| ||| ||| || ||||| || || ||| ||||||| | ||||| || ||||| Sbjct 134540 CAATGTCCTCCCGTCCTCAAGTTGCTTCCCGGCAAAGATCAGTCTCTGCTGGTCTGGAGG 134481 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| || ||| ||| | | || | || || | ||| || Sbjct 134480 AATACCTTCCTTGTCTTGGATCTTTGCTTTAACATTGTCGATGGTATCTGAACTTTCAAC 134421 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| || | ||||||||||| | || || || || || ||||| Sbjct 134420 TTCAAGGGTGATTGTCTTGCCGGTAAGCGTCTTGACAAAGATCTGCAT 134373 >seq1 Length=110538649 Score = 82.4 bits (90), Expect = 8e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGA 143028 |||| || ||||| | || ||||| || || ||||||||||| ||| | || || Sbjct 14110406 CGCAGCACCAAATGGAGGGTTGATTCCTTCTGGATGTTGTAATCAGCT-AAAGTCCTTCC 14110348 Query 143029 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 143088 || || || || || |||||| | || || | ||||| || || || || ||||| || Sbjct 14110347 ATCCTCAAGCTGCTTCCCAGCAAAAATAAGCCTCTGCTGGTCAGGTGGAATCCCTTCCTT 14110288 Query 143089 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCAC 143148 || ||||||| || | | || | ||||||| | || ||||||| ||| | Sbjct 14110287 ATCTTGAATTTTTGCCTTCACATTGTCGATGGTGTCCGAGCTCTCAACTTCAAGAGTAAT 14110228 Query 143149 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || || || ||||| ||||| || || ||||||||| Sbjct 14110227 AGTTTTCCCAGTCAAGGTTTTCACAAAGATTTGCATA 14110191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506778676330080