Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq8 93.3 3e-14 seq1898 91.5 1e-13 seq1591 89.7 4e-13 seq1 82.4 6e-11 >seq8 Length=47755514 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 ||||| || |||||||| |||||||| ||||| |||| || | | || |||| || Sbjct 5426633 GTGCAGAGTTGACTCCTTCTGAATATTATAATCAGCCAGAGTCCTTCCATCTTCCAATTG 5426692 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 || || ||| |||| || |||||||||||| || | ||||| ||||| ||| || Sbjct 5426693 CTTCCCAGCAAAAATCAGCCTCTGCTGATCCGGCGGGATACCCTCCTTGTCCTGAATCTT 5426752 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 || || | | ||| ||||| | |||| || | ||| |||||||| || || Sbjct 5426753 AGCCTTCACATTGTCGATCGTATCAGAACTCTCCACCTCCAAGGTGATGGTTTTCCCCGT 5426812 Query 19018 TAAAGTTTTGACAAAAATTTGCAT 19041 ||||| || || ||||| ||||| Sbjct 5426813 CAAAGTCTTCACGAAAATCTGCAT 5426836 >seq1898 Length=217218 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||| | ||| | || || |||||||| ||||||||||| || | || | ||||| Sbjct 79080 CACAAGGTGGAGTGTGGATTCCTTTTGGATATTGTAATCTGCAAGGGTGCGCCCATCCTC 79021 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| ||||| ||| | || || ||||||||||| || | || ||||| || Sbjct 79020 CAGCTGCTTACCAGCAAATATGAGCCTCTGCTGATCTGGTGGGATCCCTTCTTTATCCTG 78961 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 |||||| || || | | | | ||| || |||| ||| | || ||||| || Sbjct 78960 AATTTTGGCCTTGACGTTGTCAATAGTGTCAGAGCTCTCCACTTCCAAAGTGATGGTCTT 78901 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||| |||||||||||||| || ||||| Sbjct 78900 TCCTGTCAAAGTTTTGACAAATATCTGCAT 78871 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| || | || || ||||| |||||||||||||| || | || | | ||||| Sbjct 78624 CACCAAATGAAGGGTTGATTCCTTCTGAATATTGTAATCTGCAAGGGTCCTTCCATCCTC 78565 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 || ||||| || ||| | || | |||||||| || || | ||||| ||||| Sbjct 78564 GAGTTGTTTCCCAGCAAATATCAACCTCTGCTGGTCTGGAGGAATACCCTCCTTGTCCTG 78505 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || || ||||| | | |||| ||||| ||| ||| | ||| || || || Sbjct 78504 GATCTTTGCCTTTACATTGTCGACGGTATCTGAGCTCTCAACTTCAAGGGTGATCGTCTT 78445 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || ||||||||||| |||||||| ||||| Sbjct 78444 GCCCGTTAAAGTTTTAACAAAAATCTGCAT 78415 >seq1591 Length=249109 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | ||||||||||| || ||||||||||| || | || | ||||||| Sbjct 28560 ACCAAGTGAAGGGTAGACTCCTTCTGGATATTGTAATCGGCGAGGGTACGGCCGTCCTCA 28501 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 ||||| || || || | ||||| || |||||||| ||| | || |||||||| Sbjct 28500 AGCTGCTTGCCGGCGAAGATAAGCCTTTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGG 28441 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 ||||| |||||| | | ||| || ||| | ||| || | || ||||| || Sbjct 28440 ATTTTGGCTTTTACGTTGTCGATTGTGTCGGAACTCTCGACCTCAAGAGTGATGGTCTTT 28381 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || |||| ||||| || || || ||||| Sbjct 28380 CCGGTTAGGGTTTTCACGAAGATCTGCAT 28352 >seq1 Length=110538649 Score = 82.4 bits (90), Expect = 6e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || |||||||||||||| || || || || | || | |||| |||| ||||| || Sbjct 85490296 GTTGACTCCTTTTGAATGTTATAGTCAGCAAGAGTCCTCCCGTCTTCCAATTGTTTCCCA 85490237 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| |||| || |||||||||||| || | ||| || ||||| |||||| || Sbjct 85490236 GCAAAAATCAGCCTCTGCTGATCCGGTGGAATGCCTTCCTTGTCTTGAATTTTGGCCTTA 85490177 Query 18965 ACCTGGCCGACAGTATCGCCAG-GCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGT 19023 || | | | | || || | || ||| ||| | || || ||||| || ||||| || Sbjct 85490176 ACATTGTCTATCGTGTC-CGAGCTCTCAACTTCCAACGTGATTGTTTTTCCAGTTAAGGT 85490118 Query 19024 TTTGACAAAAATTTGCATT 19042 || ||||| ||||||||| Sbjct 85490117 CTTAACAAAGATTTGCATT 85490099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414384873372436