Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq6 87.8 1e-12 >seq6 Length=97571839 Score = 87.8 bits (96), Expect = 1e-12 Identities = 157/224 (70%), Gaps = 14/224 (6%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||||||| | ||| | ||| || || ||||| ||||||||||||| ||| | ||| | Sbjct 19666986 CGCAACACAAGATGGAGTGTGGATTCCTTTTGAATATTGTAATCAG-CAA---GTGTTCG 19666931 Query 33215 ----TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTC 33270 || |||| ||| |||||| ||| || || | ||| ||||| | || || ||||| Sbjct 19666930 ACCATCTTCCAGTTGTTTTCCAGCAAAAATCAACCTTTGTTGGTCTGGAGGAATTCCTTC 19666871 Query 33271 TTTTTCGCTAATCGCCTGTTTT-ACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAG 33329 || || |||| |||||| || | | ||| ||||| | | ||| ||||| | Sbjct 19666870 CTTGTCTTGAATC-TTTGTTTTAACATTGTCAATGGTGTCTGAGCTCTCAACCTCCAGTG 19666812 Query 33330 TTATCGTTTTTCCCGTAAGAGT----TTTTACGAAAATTTGCAT 33369 |||| || ||||| ||||| || || ||||| |||||||| Sbjct 19666811 TTATGGTCTTTCCAGTAAGGGTCTTAATTAACGAAGATTTGCAT 19666768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318633097516212