Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq1 118 8e-22 seq1898 105 5e-18 seq854 86.0 4e-12 seq8 82.4 5e-11 seq6 82.4 5e-11 >seq1 Length=110538649 Score = 118 bits (130), Expect = 8e-22 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 43919 TGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTA-ATTGACGCTCATCGTCCAATTG 43977 || ||||| ||| ||||||||||||||||| | | || ||| |||| |||||||| Sbjct 86551108 TGGAGCGTTGACTCCTTTTGAATATTATAATCTGCCAGAGTG-CGCCCATCTTCCAATTG 86551166 Query 43978 TTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTT 44037 || || ||||| |||| || ||| |||||| | || | |||||| |||||| |||||| Sbjct 86551167 CTTCCCAGCAAAAATCAGCCTTTGTTGGTCCGGTGGAATACCTTCCTTATCTTGAATTTT 86551226 Query 44038 TTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGT 44097 || || || ||| ||| || | ||| || || | || |||||||| || || Sbjct 86551227 CGCCTTAACGTTATCAATAGTGTCCGAGCTCTCAACTTCCAATGTGATTGTTTTTCCAGT 86551286 Query 44098 TAAAGTCTTCACAAATATTTGCAT 44121 || ||||| |||||||||||||| Sbjct 86551287 CAATGTCTTAACAAATATTTGCAT 86551310 Score = 95.1 bits (104), Expect = 9e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 ||| ||||||||||||||||| | | |||| |||| |||||||| || |||||||| Sbjct 85489379 CTCCTTTTGAATATTATAATCTGCGAGTGTACGCCCATCTTCCAATTGCTTCCCTGCAAA 85489320 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 ||||| || ||||| ||| | || | ||| || || ||| |||||| || || | Sbjct 85489319 TATCAGCCTCTGCTGATCCGGTGGAATACCCTCCTTGTCTTGAATTTTCGCCTTAACATT 85489260 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 | | | || |||| || || || | || || ||||| || ||||| || || || Sbjct 85489259 ATCTATCGTGTCTGAGTTTTCAACTTCCAGTGTGATGGTTTTTCCAGTTAAGGTTTTAAC 85489200 Query 44110 AAATATTTGCAT 44121 ||| || ||||| Sbjct 85489199 AAAGATCTGCAT 85489188 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||||||||||| | ||||||||| || ||| |||||| || || |||||||| Sbjct 14110646 CCTCCTCTCAATCGGAGCACCAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCAGCA 14110587 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | | | || || | || || |||||||| ||||||| |||||||| | || Sbjct 14110586 AGAGTCCTCCCGTCCTCAAGCTGCTTCCCTGCAAAAATCAACCTCTGCTGGTCAGGTGGG 14110527 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||| || ||| |||||| || || | | | || || | ||| || Sbjct 14110526 ATTCCTTCCTTGTCTTGAATTTTAGCCTTCACATTGTCGATGGTGTCCGAGCTCTCAACT 14110467 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||| || || || ||||||||||| || ||||| Sbjct 14110466 TCAAGGGTGATAGTTTTCCCTGTCAATGTCTTCACAAAGATCTGCAT 14110420 Score = 86.0 bits (94), Expect = 4e-12 Identities = 138/196 (70%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTC-ATCGTCCAATTGTTTTCCTGCAAA 43989 || ||||||||||||||||| | || | | || ||| ||||||||||| |||||||| Sbjct 85490062 TCCTTTTGAATATTATAATC-TGCAAGAGTCCTTCCATCTTCCAATTGTTTCCCTGCAAA 85490004 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 |||| | |||||||| | || | ||| || ||||| || || || || | Sbjct 85490003 AATCAGTCTCTGCTGGTCTGGTGGGATACCCTCCTTATCCTGTATCTTGGCCTTCACATT 85489944 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 ||| ||||| | |||||| || | ||| || || || || || || |||||||| Sbjct 85489943 GTCAATGGTATCAGAACTCTCCACCTCCAACGTGATCGTCTTCCCCGTCAACGTCTTCAC 85489884 Query 44110 AAATATTTGCATGTCG 44125 ||| || |||||| || Sbjct 85489883 AAAGATCTGCATGCCG 85489868 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| || |||| || | ||||| ||| || ||| || || |||||||| || || Sbjct 14110191 ACCACCCCTCAGCCTCAGCACCAGATGGAGAGTGGATTCCTTCTGAATATTGTAGTCAGC 14110132 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | ||| |||| || | ||| ||||| || || ||||||| ||||| || |||| Sbjct 14110131 AAGGGTACGACCATCCTCAAGTTGCTTTCCAGCGAAGATCAACCTCTGCTGATCTGGAGG 14110072 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||||| ||||| |||||| | ||| ||||| | ||| || Sbjct 14110071 AATGCCTTCTTTATCCTGGATTTTAGCTTTGACATTGTCAATTGTATCGGAACTCTCAAC 14110012 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| || || || || ||||| || ||||| || ||||| Sbjct 14110011 CTCAAGGGTAATAGTCTTTCCTGTCAAAGTTTTTACAAAGATCTGCAT 14109964 >seq1898 Length=217218 Score = 105 bits (116), Expect = 5e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 |||||| ||||| | ||||||| ||| || || ||| || || || |||||||| Sbjct 78870 ACCTCCCCTCAAACGCAACACCAGATGAAGTGTCGACTCCTTCTGTATGTTATAATCAGC 78811 Query 43954 TAATTGACGCTC-ATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 || || | || ||| || | ||| || ||||||||||||||||| |||||||| | | Sbjct 78810 -AAGTGTCCTTCCATCTTCAAGTTGCTTCCCTGCAAATATCAACCGCTGCTGGTCTGGGG 78752 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | ||||| || ||| |||||| || || || ||| || |||| ||| | Sbjct 78751 GAATCCCTTCCTTGTCTTGAATTTTGGCCTTCACGTTATCAATTGTGTCTGAACTCTCAA 78692 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 | || | || || ||||| || || |||||||| || || ||||||||| Sbjct 78691 CCTCCAAGGTGATAGTTTTTCCTGTCAAAGTCTTGACGAAGATTTGCATG 78642 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||| |||| | | ||||||||| || || || || |||||||| ||||| | Sbjct 78641 CCTCCCCTCAGACGAAGCACCAAATGAAGGGTTGATTCCTTCTGAATATTGTAATC-TGC 78583 Query 43955 AATTGACGCTC-ATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | | || ||| || | |||||| || ||||||||||||| |||||||| |||| Sbjct 78582 AAGGGTCCTTCCATCCTCGAGTTGTTTCCCAGCAAATATCAACCTCTGCTGGTCTGGAGG 78523 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||| || || || || ||| || || | | || ||||||| ||| || Sbjct 78522 AATACCCTCCTTGTCCTGGATCTTTGCCTTTACATTGTCGACGGTATCTGAGCTCTCAAC 78463 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | || || || || || |||||||| || ||||| || |||||| Sbjct 78462 TTCAAGGGTGATCGTCTTGCCCGTTAAAGTTTTAACAAAAATCTGCATG 78414 >seq854 Length=364260 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||| ||||| | || ||||||||| || ||| |||||| || ||||||||||| Sbjct 70179 CCTCCCCTCAAACGTAGCACCAAATGCAGTGTGGACTCTTTCTGGATATTATAATCAGCA 70120 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | | |||| || | || || || ||||| ||||| || ||||| || | || Sbjct 70119 AGAGTCCTCCCATCCTCAAGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCTGGCGGA 70060 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | |||||||||||| || || || || || ||| ||||| | || || Sbjct 70059 ATCCCTTCTTTATCTTGGATCTTCGCCTTTACATTATCAATTGTATCAGAACTTTCAACC 70000 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || ||||| || || || | ||||||||||| || ||||| Sbjct 69999 TCCAAGGTGATTGTCTTCCCTGTCAGTGTCTTCACAAAGATCTGCAT 69953 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTG-ACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 ||||| || || |||||||| | || | ||| |||| |||| || || || ||||| Sbjct 70371 TCTTTCTGGATGTTATAATC-TGCAAGGGTACGACCATCCTCCAGCTGCTTACCAGCAAA 70313 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 |||| || |||||| || | || | ||| || || || ||| || ||| || | Sbjct 70312 AATCAGCCTTTGCTGATCTGGTGGAATACCCTCCTTGTCCTGAATCTTCGCTTTCACGTT 70253 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 | ||| |||||| | |||||| || | || || || || || |||| |||||| || Sbjct 70252 ATCAATAGTATCAGAGCTCTCCACCTCCAAAGTGATGGTCTTCCCAGTTAGAGTCTTGAC 70193 Query 44110 AAATATTTGCAT 44121 |||||||||||| Sbjct 70192 AAATATTTGCAT 70181 >seq8 Length=47755514 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 ||||||||| || ||| ||| || |||||||| ||||| ||| | |||| || Sbjct 5427083 CACCAAATGAAGGGTGGACTCCTTCTGAATATTGTAATCAGCTAAAGTCCTTCCATCTTC 5427142 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 ||| ||||| || ||||| ||||||| ||||| || | || | || || || || Sbjct 5427143 CAACTGTTTACCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCCTG 5427202 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 ||| || ||||| | ||| || || | || || || | || |||||||| Sbjct 5427203 AATCTTAGCCTTGACGTTGTCAATTGTGTCGGAGCTTTCGACTTCAAGGGTGATTGTTTT 5427262 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| || ||||||||||| || ||||| Sbjct 5427263 CCCGGTCAACGTCTTCACAAAAATCTGCAT 5427292 >seq6 Length=97571839 Score = 82.4 bits (90), Expect = 5e-11 Identities = 152/220 (69%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 ||||| | ||| || ||| || ||||||||||| ||||| | | || |||| Sbjct 19666983 AACACAAGATGGAGTGTGGATTCCTTTTGAATATTGTAATCAGCAAGTGTTCGACCATCT 19666924 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 |||| ||||||||| ||||| ||||||| ||| ||||| |||| | ||||| || ||| Sbjct 19666923 TCCAGTTGTTTTCCAGCAAAAATCAACCTTTGTTGGTCTGGAGGAATTCCTTCCTTGTCT 19666864 Query 44030 GAAATTTTTTGTTTGACCATAG-CAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088 || | ||||||| | ||| | ||| || |||| ||| || || | || || || Sbjct 19666863 TGAA-TCTTTGTTTTAACATTGTCAATGGTGTCTGAGCTCTCAACCTCCAGTGTTATGGT 19666805 Query 44089 TTTACCGGTTAAAGTC----TTCACAAATATTTGCATGTC 44124 || || || | ||| || || || |||||||| || Sbjct 19666804 CTTTCCAGTAAGGGTCTTAATTAACGAAGATTTGCATATC 19666765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354616778648712