Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq11 98.7 8e-16 seq8 86.0 5e-12 seq1 86.0 5e-12 seq6 84.2 2e-11 >seq11 Length=61252062 Score = 98.7 bits (108), Expect = 8e-16 Identities = 115/153 (75%), Gaps = 3/153 (2%) Strand=Plus/Minus Query 19971 TTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATG 20029 || ||||| ||||||| | | |||||| |||| || ||||| |||||||| || || Sbjct 13809923 TTAATCATAGTTCCTCCCCTGAGCCTCAAAACCAGGTGAAGTGTTGATTCTTTCTGGATA 13809864 Query 20030 TTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGT 20089 |||||||| ||| |||| | ||||||||| ||||| || ||| |||| | |||||| Sbjct 13809863 TTGTAATCAGCCAGAGTTCGACCATCTTCCAACTGTTTTCCAGCAAAAATCAACCTCTGC 13809804 Query 20090 TGATCGACGGGCACGCCTTCTTTGTC--GGCAA 20120 ||||| || | ||||||||||| ||||| Sbjct 13809803 TGATCAGGAGGTATCCCTTCTTTGTCCTGGCAA 13809771 >seq8 Length=47755514 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 ||||||||| || || || || || || || |||||||| | | ||| | |||||| Sbjct 5427083 CACCAAATGAAGGGTGGACTCCTTCTGAATATTGTAATCAGCTAAAGTCCTTCCATCTTC 5427142 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 ||| ||||| || ||| | || | |||||| ||||| || | || || ||||| Sbjct 5427143 CAACTGTTTACCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCCTG 5427202 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGT-TTCCACGGTAATGGTTT 20177 ||| || || || | | ||| | ||| || || || ||| | ||| || |||| Sbjct 5427203 AATCTTAGCCTTGACGTTGTCAATTGTGTCGG-AGCTTTCGACTTCAAGGGTGATTGTTT 5427261 Query 20178 TGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 | ||||||||||| || |||||||| ||||| Sbjct 5427262 TCCCGGTCAACGTCTTCACAAAAATCTGCAT 5427292 >seq1 Length=110538649 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 || ||||||||| || || ||||| || || ||||||||||| | | ||| | ||| Sbjct 14110404 CAGCACCAAATGGAGGGTTGATTCCTTCTGGATGTTGTAATCAGCTAAAGTCCTTCCATC 14110345 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 || | || || || ||| ||||||||||||| || || || | ||||| || || Sbjct 14110344 CTCAAGCTGCTTCCCAGCAAAAATAAGCCTCTGCTGGTCAGGTGGAATCCCTTCCTTATC 14110285 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGG 20174 ||||||| ||||| | | | | | || | || | || ||| | ||||| | Sbjct 14110284 TTGAATTTTTGCCTTCACATTGTCGATGGTGTC-CGAGCTCTCAACTTCAAGAGTAATAG 14110226 Query 20175 TTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| || ||||| ||||| ||||| |||||||| Sbjct 14110225 TTTTCCCAGTCAAGGTTTTCACAAAGATTTGCAT 14110192 >seq6 Length=97571839 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||| || | | |||||| | ||| || || ||||| || || ||||| ||||| | Sbjct 19649559 CCTCCACGAAGACGCAACACAAGATGGAGAGTGGATTCCTTCTGAATGTTATAATCAGTC 19649500 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | |||||| | |||||| || ||| |||| | ||| |||||||| || Sbjct 19649499 AGTGTTCGACCATCTTCAAGTTGTTTTCCAGCAAAAATTAACCTTTGTTGATCTGGAGGA 19649440 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGT 20160 | ||||||||||| ||||||| ||| || | | ||| | || ||| | || Sbjct 19649439 ATTCCTTCTTTGTCTTGAATTTTTGTTTTAACATTGTCAATGGTGTC-ACAGCTCTCAAC 19649381 Query 20161 TTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | |||||||| || || || | || || ||||| |||||||| Sbjct 19649380 CTCAAGTGTAATGGTCTTTCCTGTGAGTGTCTTAACAAAGATTTGCAT 19649333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419397000335514