Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq2 86.0 5e-12 seq1 86.0 5e-12 seq1629 82.4 6e-11 seq854 82.4 6e-11 seq8 82.4 6e-11 >seq2 Length=96359640 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| ||||| || ||| |||||| || |||||||||||||| | ||| | || || Sbjct 95422843 CACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGCTAGGGTTCGGCCATCTTC 95422784 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||| || ||| || |||| | | |||||| ||| || | | |||||||||| Sbjct 95422783 AAGCTGTTTTCCGGCGAAAATGAGCCTCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTG 95422724 Query 48637 AATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 || || ||| | | | || || || |||| || || ||| | || ||||| Sbjct 95422723 GATCTTTGCCTTCACGTTGTCG--ATTGTGTCGGAGGATTCGACCTCAAGGGTGATGGTC 95422666 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||||| || || |||||||| || ||||||||| Sbjct 95422665 TTACCCGTCAGGGTTTTCACGAAGATCTGCATC 95422633 >seq1 Length=110538649 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| | |||||| || |||||| || ||||||||||| || | || |||| || Sbjct 83615680 CACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGCTAGGGTACGGCCGTCTTC 83615739 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| ||| || |||| | |||||||||||| || | | |||||| || Sbjct 83615740 AAGCTGCTTTCCGGCGAAAATCAGACGCTGCTGATCTGGGGGAATCCCTTCCTTATCTTG 83615799 Query 48637 AATTTTCTGCTT---GATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 || || |||| || | || || || |||| ||| || ||| | || || || Sbjct 83615800 GATCTT-GGCTTTCACATTGTCG--ATTGTGTCGGAAGATTCAACCTCAAGGGTGATTGT 83615856 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 |||||| || || |||||||| || ||||||||| Sbjct 83615857 TTTACCCGTTAGGGTTTTCACGAAGATCTGCATC 83615890 >seq1629 Length=244661 Score = 82.4 bits (90), Expect = 6e-11 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | ||| | || || ||||| || || |||||| || ||||| || || || Sbjct 134827 CCTCCCCTCAAACGCAAGACCAAATGGAGAGTCGACTCCTTCTGGATGTTATAGTCCGC- 134769 Query 48560 AATTGTCGCT--CGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || ||| || ||||||||| ||| ||||| | | || ||||||||||| || || Sbjct 134768 AAGAGTC-CTGCCGTCCTCCAACTGTTTACCAGCAAAGATCAAACGCTGCTGGTCTGGCG 134710 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGC-TTGATAGACGCTATGGTATCGGTAGACTCC 48676 | | || |||||||| || || ||| |||| | | |||||||| | | ||| Sbjct 134709 GGATACCCTCCTTGTCTTGGATCTT-TGCTTTGACATTGTCAATGGTATCAGAACTCTCA 134651 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | ||||| || || || || | ||| || |||||||||||||| Sbjct 134650 ACCTCCAAAGTTATTGTCTTCCCAGTCAAAGTCTTGACAAAAATCTGCAT 134601 >seq854 Length=364260 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTG 48582 ||||| ||| |||||| || |||||||| || || | | || ||| | ||||| ||||| Sbjct 69699 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTG-CGCCCATCCTCAAGCTG 69641 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || | | || || | ||||||||| || | | ||| |||||| || || Sbjct 69640 CTTTCCAGCAAAGATCAACCTCTGCTGATCTGGAGGGATGCCTTCTTTGTCCTGGATCTT 69581 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 | ||| | | | ||||| |||| ||| ||| | || ||||| || || || Sbjct 69580 CGCCTTAACATTGTCAATGGTGTCGGAGCTCTCAACCTCAAGGGTGATGGTCTTCCCAGT 69521 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 | ||||||||||||||||||||| Sbjct 69520 CAAAGTTTTCACAAAAATCTGCAT 69497 >seq8 Length=47755514 Score = 82.4 bits (90), Expect = 6e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCG-TCCTCCAGCTGCTTACCGCCGT 48593 |||||| ||||| || |||||||||| ||| || || |||| ||||| || | Sbjct 5426645 CTCCTTCTGAATATTATAATCAGCCAGA-GTCCTTCCATCTTCCAATTGCTTCCCAGCAA 5426703 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 |||| | | |||||||||| ||| | || ||||||||| ||| || ||| | | Sbjct 5426704 AAATCAGCCTCTGCTGATCCGGCGGGATACCCTCCTTGTCCTGAATCTTAGCCTTCACAT 5426763 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | || ||||| | | |||| ||| | || |||||||| || || | ||| |||| Sbjct 5426764 TGTCGATCGTATCAGAACTCTCCACCTCCAAGGTGATGGTTTTCCCCGTCAAAGTCTTCA 5426823 Query 48714 CAAAAATCTGCATC 48727 | |||||||||||| Sbjct 5426824 CGAAAATCTGCATC 5426837 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT-CGTCCT 48575 ||| |||||||| ||| |||||| ||||| ||||||||||| || ||| | | || | Sbjct 5427083 CACCAAATGAAGGGTGGACTCCTTCTGAATATTGTAATCAGCTAA-AGTCCTTCCATCTT 5427141 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 ||| ||| ||||| | | || || | ||||||||| || | | ||||||||| Sbjct 5427142 CCAACTGTTTACCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCCT 5427201 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC-TCGACTGTTATGGTT 48694 ||| || ||||| | || || |||| || | || | || | || || ||| Sbjct 5427202 GAATCTTAGCCTTGACGTTGTCAATTGTGTCGG-AGCTTTCGACTTCAAGGGTGATTGTT 5427260 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || ||||| | || |||||||||||||||||| Sbjct 5427261 TTCCCGGTCAACGTCTTCACAAAAATCTGCATC 5427293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421060246041194