Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq237 125 4e-24 seq359 120 2e-22 seq14 118 6e-22 seq597 116 2e-21 seq6 116 2e-21 seq32721 113 2e-20 seq464 113 2e-20 seq161 113 2e-20 seq8 113 2e-20 seq1 113 2e-20 seq4337 111 8e-20 seq2467 111 8e-20 seq1348 111 8e-20 seq124 111 8e-20 seq10 111 8e-20 seq12772 109 3e-19 seq2159 109 3e-19 seq12 109 3e-19 seq5 109 3e-19 seq2 100 1e-16 seq242 91.5 8e-14 seq3076 89.7 3e-13 seq2453 86.0 3e-12 seq11 84.2 1e-11 >seq237 Length=675088 Score = 125 bits (138), Expect = 4e-24 Identities = 82/90 (91%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 ||||||||| ||||| ||||||||| | | |||||||| |||||||||||||||||||| Sbjct 85811 AATAAAAAACCAAATATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCA 85870 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| |||||||||||||||||||| Sbjct 85871 CGACGCTCTGACCAACTGAGCTAATGGGCC 85900 >seq359 Length=567626 Score = 120 bits (132), Expect = 2e-22 Identities = 91/108 (84%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 11422 TCCAGGGAAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCG 11481 |||| | ||| ||| || || |||| | ||| ||||||||| | | |||||||| || Sbjct 65349 TCCAAGAAAACATAAAACAAAAAAAACAAAAAAGTGGCCCATGCAGGTCTCGAACCTGCG 65290 Query 11482 ACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 65289 ACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 65242 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 81572 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 81513 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 81512 TGAGCTAATGGGCC 81499 >seq14 Length=3028552 Score = 118 bits (130), Expect = 6e-22 Identities = 88/103 (85%), Gaps = 2/103 (2%) Strand=Plus/Minus Query 11427 GGAAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTT 11486 ||||| | | || || |||||| |||||||||||| | | |||||||| ||||||| Sbjct 869584 GGAAAAAAAAAAAAAAGAAAAAAC--AATTGGCCCATGCAGGTCTCGAACCTGCGACCTT 869527 Query 11487 CGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||| |||||||||||||||||||| Sbjct 869526 CGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 869484 >seq597 Length=445294 Score = 116 bits (128), Expect = 2e-21 Identities = 87/101 (86%), Gaps = 4/101 (4%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 |||||| ||| || | ||||| ||||||||||| | | |||||||| ||||||||| Sbjct 103217 AAATAT-GAAGGAAAATAAAAT---ATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCG 103162 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| |||||||||||||||||||| Sbjct 103161 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 103121 >seq6 Length=97571839 Score = 116 bits (128), Expect = 2e-21 Identities = 88/102 (86%), Gaps = 3/102 (3%) Strand=Plus/Minus Query 11428 GAAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 |||| || |||| || ||||| |||||||||||| | | |||||||| |||||||| Sbjct 11464799 GAAAAAT-GAATCAACTAAAAAC--AATTGGCCCATGCAGGTCTCGAACCTGCGACCTTC 11464743 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||| |||||||||||||||||||| Sbjct 11464742 GCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 11464701 >seq32721 Length=1544 Score = 113 bits (124), Expect = 2e-20 Identities = 78/89 (88%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||| | ||| ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 1228 AAAAAAAGAAGAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 1169 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 1168 GACGCTCTAACCAACTGAGCTAATGGGCC 1140 >seq464 Length=500387 Score = 113 bits (124), Expect = 2e-20 Identities = 79/90 (88%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 11442 ATAAAAAATCAAATTG--GCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 |||||||| | |||| ||||||| | | |||||||| |||||||||||||||||||| Sbjct 326757 ATAAAAAACAAGATTGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCA 326698 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| |||||||||||||||||||| Sbjct 326697 CGACGCTCTAACCAACTGAGCTAATGGGCC 326668 >seq161 Length=831726 Score = 113 bits (124), Expect = 2e-20 Identities = 78/89 (88%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||| | ||| ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 635442 AAAAAAAGAAGAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 635383 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 635382 GACGCTCTAACCAACTGAGCTAATGGGCC 635354 >seq8 Length=47755514 Score = 113 bits (124), Expect = 2e-20 Identities = 72/79 (91%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 16299767 AAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 16299826 Query 11513 AACTGAGCTAATGGGCCGT 11531 ||||||||||||||||||| Sbjct 16299827 AACTGAGCTAATGGGCCGT 16299845 >seq1 Length=110538649 Score = 113 bits (124), Expect = 2e-20 Identities = 70/76 (92%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 7779276 ATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 7779217 Query 11514 ACTGAGCTAATGGGCC 11529 |||||||||||||||| Sbjct 7779216 ACTGAGCTAATGGGCC 7779201 >seq4337 Length=92646 Score = 111 bits (122), Expect = 8e-20 Identities = 78/89 (88%), Gaps = 3/89 (3%) Strand=Plus/Minus Query 11444 AAAAAATCAAA---TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||| | | |||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 32136 AAAAAATTACACAGTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 32077 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 32076 GACGCTCTAACCAACTGAGCTAATGGGCC 32048 >seq2467 Length=175934 Score = 111 bits (122), Expect = 8e-20 Identities = 77/86 (90%), Gaps = 3/86 (3%) Strand=Plus/Plus Query 11445 AAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| |||| ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 23950 AAAAA--AAATATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 24007 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 24008 GCTCTAACCAACTGAGCTAATGGGCC 24033 >seq1348 Length=277544 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | ||||||||| |||||||||||||||||||||||||||| ||||| Sbjct 223978 TTGGCCCATGCAGGTATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 224037 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 224038 CTGAGCTAATGGGCC 224052 >seq124 Length=933885 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || |||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 156452 AATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 156511 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 156512 CAACTGAGCTAATGGGCC 156529 >seq10 Length=51082206 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 42481005 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 42481064 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 42481065 CTGAGCTAATGGGCC 42481079 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | | |||||| ||||||||||||||||||||||||||||| |||||| Sbjct 44220362 TGGCCCATGCAGGTCTAGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 44220303 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 44220302 TGAGCTAATGGGCC 44220289 >seq12772 Length=9058 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 947 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1006 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 1007 TGAGCTAATGGGCC 1020 >seq2159 Length=196584 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 120388 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 120329 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 120328 TGAGCTAATGGGCC 120315 >seq12 Length=53491057 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 10082937 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 10082996 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 10082997 TGAGCTAATGGGCC 10083010 Score = 87.8 bits (96), Expect = 9e-13 Identities = 54/57 (95%), Gaps = 1/57 (2%) Strand=Plus/Plus Query 11474 AACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCT-AATGGGCC 11529 ||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||| Sbjct 26081668 AACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAAATGGGCC 26081724 >seq5 Length=57012777 Score = 109 bits (120), Expect = 3e-19 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 41347540 AAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 41347599 Query 11513 AACTGAGCTAATGGGCC 11529 ||||||||||||||||| Sbjct 41347600 AACTGAGCTAATGGGCC 41347616 Score = 95.1 bits (104), Expect = 6e-15 Identities = 65/73 (89%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| ||| | ||||||||||||||| |||||||||||||| |||| |||||| Sbjct 42549338 TGGCCCATGCAAGTCTTAAACCTTCGACCTTCGTGTTATTAGCACGAC-CTCTAACCAAC 42549396 Query 11516 TGAGCTAATGGGC 11528 ||||||||||||| Sbjct 42549397 TGAGCTAATGGGC 42549409 >seq2 Length=96359640 Score = 100 bits (110), Expect = 1e-16 Identities = 57/59 (97%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 27377281 TCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 27377339 >seq242 Length=670920 Score = 91.5 bits (100), Expect = 8e-14 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||||||| | | | ||| | ||||||||||||||||||||| ||||||| ||| Sbjct 615456 AAATGGCCCATGCAGGTTTTAAACGTGCGACCTTCGCGTTATTAGCACAACGCTCTAACC 615397 Query 11513 AACTGAGCTAATGGGCC 11529 ||||||||||||||||| Sbjct 615396 AACTGAGCTAATGGGCC 615380 >seq3076 Length=141825 Score = 89.7 bits (98), Expect = 3e-13 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 11477 CTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGTC 11532 || ||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 45776 CTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCATC 45831 >seq2453 Length=177091 Score = 86.0 bits (94), Expect = 3e-12 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | || ||| | ||||||| | |||||||||||||||||| || Sbjct 72370 AAAATGGCCCATGCAGGTCTCTAACTTGCGACCTTGACATTATTAGCACGACGCTCTAAC 72429 Query 11512 CAACTGAGCTAATGGGCCG 11530 || |||||||||||||||| Sbjct 72430 CAGCTGAGCTAATGGGCCG 72448 >seq11 Length=61252062 Score = 84.2 bits (92), Expect = 1e-11 Identities = 48/50 (96%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 11480 CGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 10523686 CGAACTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 10523637 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261372665548744