Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq637 145 1e-30 seq1528 134 2e-27 seq871 131 3e-26 seq12 129 9e-26 seq224 123 4e-24 seq7 123 4e-24 seq3238 107 3e-19 seq2100 107 3e-19 seq325 104 4e-18 seq3692 93.3 7e-15 >seq637 Length=431878 Score = 145 bits (160), Expect = 1e-30 Identities = 176/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| ||||| || |||||||| || ||||| | |||||| | || || || Sbjct 100013 GATAACATCCAGGGAATTACGAAGCCAGCAATTCGTCGGTTAGCTCGTAGGGGAGGTGTG 100072 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| | ||||| || |||| ||||||| |||| || ||||||||||| || || Sbjct 100073 AAGCGTATATCTGGTCTGATCTACGAAGAGACACGTGGCGTGTTGAAGATCTTTCTAGAG 100132 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| || | ||||||| | ||| ||||||||||| | | |||||||| || | Sbjct 100133 AACGTGATTCGTGATGCTGTTACCTACACCGAGCACGCCAGGAGAAAGACTGTGACTGCT 100192 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | || |||||| | || | || || | | | || |||||||| ||||| Sbjct 100193 ATGGATGTTGTATATGCACTCAAGAGGCAGGGTAGGACTCTCTACGGTTTTGGTGGTTAA 100252 >seq1528 Length=254819 Score = 134 bits (148), Expect = 2e-27 Identities = 173/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| ||||| || ||||| || || ||||| |||||||| | || || || Sbjct 235919 GATAACATCCAGGGAATTACGAAGCCCGCAATTCGTCGGTTGGCTCGTAGGGGAGGTGTG 235860 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| | ||||| || |||| ||||||| |||| || |||||||||| || || Sbjct 235859 AAGCGTATATCTGGTCTGATCTACGAAGAGACACGTGGAGTGCTGAAGATCTTTCTAGAG 235800 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| || | ||||||| | ||| || |||||||| | | |||||||| || | Sbjct 235799 AACGTGATTCGTGATGCTGTTACCTACACTGAGCACGCCAGGAGAAAGACTGTTACTGCT 235740 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||||| | || || ||| | || | || ||| | | | ||||| ||||| |||| Sbjct 235739 ATGGATGTTGTTTACGCACTCAAGAGGCAGGGCAGGACTCTCTATGGATTTGGTGGTTA 235681 >seq871 Length=359287 Score = 131 bits (144), Expect = 3e-26 Identities = 177/247 (72%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| |||||||||||||| ||||| |||||||| || | ||| |||||||| | || Sbjct 233562 CTTCGTGATAACATCCAAGGTATCACAAAGCCAGCAATTAGGCGTTTGGCTCGTAGAGGA 233621 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| |||||| || |||| | ||||||| |||| |||| || | |||||||| Sbjct 233622 GGAGTGAAGCGTATCAGTGGACTCATCTATGAGGAGACACGTGGCGTGCTCAAGATCTTT 233681 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| || || | ||||||| | || || |||||||||| | ||||| || Sbjct 233682 TTGGAGAATGTGATTCGTGATGCTGTAACTTACACTGAGCACGCTAGGAGAAAGACCGTG 233741 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | |||||| | || || || | || | ||||| | | | ||||| |||||| Sbjct 233742 ACTGCTATGGATGTTGTGTACGCGCTCAAGAGACAAGGAAGGACTTTGTATGGGTTTGGA 233801 Query 16694 AGTTAAT 16700 |||||| Sbjct 233802 GGTTAAT 233808 Score = 131 bits (144), Expect = 3e-26 Identities = 176/245 (72%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || ||||||||||| ||||| |||||||| ||| | ||| | |||||| | || Sbjct 249864 CTCCGCGACAACATCCAAGGTATCACAAAGCCAGCAATCAGGCGTTTAGCTCGTAGAGGA 249923 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| |||||| || ||| | |||| || |||| |||| || | |||||||| Sbjct 249924 GGAGTGAAGCGTATCAGTGGGCTTATCTACGAGGAGACACGTGGCGTGCTCAAGATCTTT 249983 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| || || | ||||||| | || || |||||||||| | |||||||| Sbjct 249984 CTAGAGAATGTGATTCGTGATGCTGTAACTTACACTGAGCACGCTAGGAGGAAGACTGTG 250043 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | |||||| | || || || | || | |||||||||| | ||||||||||| Sbjct 250044 ACTGCTATGGATGTTGTTTACGCGCTCAAGAGGCAAGGCCGTACTCTCTATGGTTTTGGT 250103 Query 16694 AGTTA 16698 |||| Sbjct 250104 GGTTA 250108 >seq12 Length=53491057 Score = 129 bits (142), Expect = 9e-26 Identities = 172/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || || || ||||||||||| ||||| || || || ||| |||||||| | || ||||| Sbjct 1871694 GACAATATTCAAGGAATCACAAAGCCTGCAATTCGGCGTTTGGCTCGTAGGGGAGGAGTG 1871753 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| | ||||| ||| | ||||| |||| |||| ||||||||||| || | || Sbjct 1871754 AAGCGTATTTCTGGTTTGATTTATGAGGAGACGCGTGGGGTTTTGAAGATATTTTTGGAG 1871813 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || || | ||||||| | ||| || || ||||||| | ||||| || || | Sbjct 1871814 AATGTGATTCGTGATGCTGTGACCTACACTGAACACGCTAGGAGAAAGACAGTTACTGCT 1871873 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||||| | || |||||| | || | || ||| | | | ||||| ||||| |||| Sbjct 1871874 ATGGATGTTGTTTATGCACTCAAGAGACAGGGCAGGACTCTCTATGGATTTGGGGGTTA 1871932 Score = 127 bits (140), Expect = 3e-25 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| ||||||||||| |||||||| ||||| || || || ||| |||||||| | || Sbjct 1903255 CTTCGTGATAACATCCAGGGAATCACAAAGCCTGCAATTCGGCGTTTGGCTCGTAGAGGA 1903314 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| || ||| | ||||| ||| | || || |||| || | ||| |||||||| || Sbjct 1903315 GGAGTGAAACGTATTTCTGGTTTGATTTACGAGGAGACACGAGGTGTATTGAAGATATTT 1903374 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| || || | ||||||| | || || |||||||||| | |||||||| Sbjct 1903375 TTGGAGAATGTGATTCGTGATGCTGTGACTTACACTGAGCACGCTAGGAGAAAGACTGTT 1903434 Query 16634 ACCTCCATGGATATCGTCTATGC 16656 || | |||||| | || ||||| Sbjct 1903435 ACTGCTATGGATGTTGTTTATGC 1903457 >seq224 Length=694170 Score = 123 bits (136), Expect = 4e-24 Identities = 175/246 (71%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || |||||||||||||| ||||| |||||||| ||| | ||| |||| ||| | || Sbjct 593415 TCTCCGCGATAACATCCAAGGTATCACAAAGCCAGCAATCAGGCGTTTGGCACGTAGAGG 593356 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||||| |||||| | ||| | |||| || |||| |||| || | |||||||| Sbjct 593355 AGGAGTGAAGCGTATTAGCGGACTTATCTACGAGGAGACACGTGGCGTGCTCAAGATCTT 593296 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 || ||| || || | ||||||| | || || |||||||| | | ||||| || Sbjct 593295 TCTAGAGAATGTGATTCGTGATGCTGTAACTTACACAGAGCACGCGAGGAGGAAGACAGT 593236 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | |||||| | || || || | || | |||||||||| | ||||||||||| Sbjct 593235 GACTGCTATGGATGTTGTGTACGCGCTCAAGAGGCAAGGCCGTACTCTCTATGGTTTTGG 593176 Query 16693 AAGTTA 16698 |||| Sbjct 593175 TGGTTA 593170 >seq7 Length=114765206 Score = 123 bits (136), Expect = 4e-24 Identities = 176/248 (71%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || |||||||| || |||||||| ||||||||||| || || |||||||| | || Sbjct 99905027 TCTCCGTGATAACATTCAGGGAATCACTAAGCCAGCTATTCGCCGATTGGCTCGTAGGGG 99905086 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 |||||| ||| | | || || | |||||||||| | | ||||||||||| || Sbjct 99905087 TGGAGTGAAGAGAATTAGCGGGCTGATTTATGAAGAGACGAGAGGAGTTTTGAAGATATT 99905146 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | | | || || | ||||||| | || || |||||||||| | |||||||| Sbjct 99905147 TTTGGAAAATGTGATTCGTGATGCTGTTACTTACACTGAGCACGCTAGGAGAAAGACTGT 99905206 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | |||||| | || ||| | |||| | |||||| | | ||||||| ||||| Sbjct 99905207 TACTGCAATGGATGTTGTTTATTCGCTGAAGAGACAAGGCAGGACCCTTTATGGATTTGG 99905266 Query 16693 AAGTTAAT 16700 | ||| || Sbjct 99905267 AGGTTGAT 99905274 Score = 105 bits (116), Expect = 1e-18 Identities = 171/246 (70%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || |||||||| || ||||| || ||||||||||| || | | || | | ||| Sbjct 99919204 CTCCGTGATAACATTCAGGGAATTACTAAGCCAGCTATTCGGAGATTAGCGAGAAGAGGT 99919263 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| ||| | || ||| ||| ||||||| |||| |||| || |||||||| || Sbjct 99919264 GGAGTGAAGAGAATCAGTGGGTTGATCTATGAGGAGACACGTGGAGTGTTGAAGATATTT 99919323 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | | | || || | ||||||| | || || ||||| |||| | |||||||| Sbjct 99919324 TTGGAAAATGTGATTCGTGATGCTGTGACTTACACTGAGCATGCTAGGAGAAAGACTGTT 99919383 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | |||||| | || || | ||||| | |||||| | | ||||||| ||||| Sbjct 99919384 ACTGCAATGGATGTTGTTTACTCTTTGAAGAGACAAGGCAGGACTCTTTATGGATTTGGT 99919443 Query 16694 AGTTAA 16699 ||||| Sbjct 99919444 GGTTAA 99919449 >seq3238 Length=135146 Score = 107 bits (118), Expect = 3e-19 Identities = 167/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || |||||||| ||||| || ||||| || || | | | || |||||| | || ||||| Sbjct 94392 GACAACATCCAGGGAATTACAAAGCCTGCAATTCATAGGCTCGCTCGTAGGGGAGGAGTT 94451 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| | ||||| ||| | ||||| |||| |||| ||||||||||| || | || Sbjct 94452 AAGCGTATTTCTGGTTTGATTTATGAGGAGACGCGTGGGGTTTTGAAGATATTATTGGAG 94511 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | | || | ||||||| | || | || ||||||| | || | ||| ||| | Sbjct 94512 AATATGATTCGTGATGCTGTGACTTACATAGAACACGCTAGGAGAAATATTGTTACCGCT 94571 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||||| | || |||||| | || | || ||| | | | ||||| ||||| |||| Sbjct 94572 ATGGATGTTGTTTATGCACTCAAGAGACAGGGCAGGACTCTCTATGGATTTGGGGGTTA 94630 >seq2100 Length=200213 Score = 107 bits (118), Expect = 3e-19 Identities = 172/247 (70%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||| | ||||||||||| || || || |||||||| || | ||| |||||||| | || Sbjct 85329 TCTTAGGGATAACATCCAGGGGATTACAAAGCCAGCAATTAGGCGTTTGGCTCGTAGAGG 85388 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||||| |||||| || || | ||||||| |||| |||| ||| | |||||||| Sbjct 85389 AGGAGTGAAGCGTATCAGCGGGCTCATCTATGAGGAGACACGTGGAGTTCTTAAGATCTT 85448 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | ||| || || | ||||||| | ||| || |||||||| | | |||||||| Sbjct 85449 TTTGGAGAATGTGATTCGTGATGCTGTGACCTACACTGAGCACGCAAGGAGAAAGACTGT 85508 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | |||||| | || || || | || | || || | | | || || ||||| Sbjct 85509 TACTGCTATGGATGTTGTGTACGCTCTCAAGAGGCAGGGAAGGACCTTGTACGGATTTGG 85568 Query 16693 AAGTTAA 16699 | ||||| Sbjct 85569 AGGTTAA 85575 >seq325 Length=592367 Score = 104 bits (114), Expect = 4e-18 Identities = 167/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| || || || |||||||| || | ||| |||||||| | || ||||| Sbjct 448572 GATAACATCCAGGGGATTACAAAGCCAGCAATTAGGCGTTTGGCTCGTAGAGGAGGAGTG 448513 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || || | ||||||| |||| |||| ||| | |||||||| | || Sbjct 448512 AAGCGTATCAGCGGGCTCATCTATGAGGAGACACGTGGAGTTCTTAAGATCTTTTTGGAG 448453 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || || | |||||| | ||| || |||||||| | | |||||||| || | Sbjct 448452 AATGTGATTCGAGATGCTGTTACCTACACTGAGCACGCAAGGAGAAAGACTGTTACTGCT 448393 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | || || || | || | ||||| | | | || || |||||| ||||| Sbjct 448392 ATGGATGTTGTGTACGCTCTCAAGAGGCAAGGAAGGACCTTGTACGGATTTGGAGGTTAA 448333 >seq3692 Length=115684 Score = 93.3 bits (102), Expect = 7e-15 Identities = 170/249 (68%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || || || || ||||| || ||||| ||||| | | || ||| | | |||||| Sbjct 53097 CGTGACAATATTCAGGGAATTACAAAGCCTGCTATAAGGAGGCTAGCTAGAAGAGGTGGA 53038 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || ||| | | |||||| | || ||||||| |||| |||||||||||||| || Sbjct 53037 GTGAAGAGAATTAGCGGATTGATTTACGAAGAGACACGTGGAGTTTTGAAGATCTTTCTA 52978 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 | | || || | ||||||| | ||||| || || |||| | |||||||| || Sbjct 52977 GAAAATGTGATTCGTGATGCTGTGACTTATACTGAACATGCTAGGAGAAAGACTGTTACT 52918 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 | |||||| | || ||||| | || | || || | | ||||||| ||||| || Sbjct 52917 GCTATGGATGTTGTTTATGCCCTTAAGAGACAGGGTAGGACTCTTTATGGATTTGGTGGT 52858 Query 16697 TAATCTTCT 16705 ||| |||| Sbjct 52857 TAAATTTCT 52849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79041193265442