Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2 183 4e-41 >seq2 Length=96359640 Score = 183 bits (202), Expect = 4e-41 Identities = 569/874 (65%), Gaps = 14/874 (2%) Strand=Plus/Plus Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072 || || || || || || | || || || |||||||| || |||| || || Sbjct 42515553 TTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAGC 42515612 Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 33132 ||||| ||||||||||||| | |||| || | || | | | ||||| || | | Sbjct 42515613 TCCATCCAATCAAACGGATTCTGAGCATTGTACAACTTATCATAACCCAAAGCATCCAAC 42515672 Query 33133 AATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 33192 |||||||| || || ||||| || ||| | |||||| || | ||||||||| | || Sbjct 42515673 AATCTATCAGCCACAAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAGC 42515732 Query 33193 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 33252 | || || || || | ||| || ||| || || ||||||| | ||| Sbjct 42515733 GCACAAGGCAGCGCGTCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAATT 42515792 Query 33253 GATCTAACGGTTTCTTCACTCGG-TGGATGC--AATAAATGTTTAAACATCAAACATGCG 33309 |||| ||| ||| | | | | | || ||| || | | |||||| ||| Sbjct 42515793 CCCTTAACTCGTTCCTCAGTAAGCTTCGTCCTTAACAAAC---TATAAAGCAAACAAGCG 42515849 Query 33310 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGC 33369 ||||| ||||||| ||||||||| || ||||| ||||| || || || | ||| ||| Sbjct 42515850 AAATCACAGTGCAAACCCTCGTCCCTTGAAATTAACTCGTTCGAGAAAGTTAATCCAGGC 42515909 Query 33370 ATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCT 33429 |||| || |||||||| | ||| ||||| | | ||| |||||| || || || ||| Sbjct 42515910 ATTAACCCCCGCTTTTTTAACCAGAATATAGCACAGAAGCTTCCAGAGAAAAAAATACCT 42515969 Query 33430 TCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCATGTATCCAC 33486 || || |||||| |||| | | ||| || | ||| | ||| ||||| Sbjct 42515970 TCCACACAAGCAAATGCAACCAAACGCTCCGCAAATGTTTCGGAACCGTCG---ATCCAA 42516026 Query 33487 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 33546 | | ||||| | |||||||| | ||||| || || || || | || || | Sbjct 42516027 CGTAGTGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCGCGGAATAAT 42516086 Query 33547 TAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAA 33606 | ||||||| | | || || | || | || | | ||||| ||||| || || Sbjct 42516087 CTGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACTGTACATCTCGGAG 42516146 Query 33607 TGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACT 33666 || ||||||||||| || || || || ||||||||| | ||||||| || || ||| Sbjct 42516147 TGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGCGCCTCGGCAACTTGGACT 42516206 Query 33667 TCTGTACAAAATCGTTCC-GCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAA 33725 ||| | || | | |||| || | ||||| || || ||||| ||| |||||||| Sbjct 42516207 TCT-TTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCGGAGGCGGCAAAAAA 42516265 Query 33726 CGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGAT 33785 || | || || | || |||| |||| | || ||||| | | ||| | | | | Sbjct 42516266 GGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGGGTTAGGGTTTCCCAGTGACGGTT 42516325 Query 33786 ATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 33845 ||| ||||| ||| |||||||| | ||||| || || ||| || ||||| ||||| Sbjct 42516326 ATCGGAAGATAAATCGACTTCTTCAGCAGTCCAGAAAGAGGCCAAGGCTTTTTTGTACAT 42516385 Query 33846 GTTCCAGATGTCATAATATTGGATTGGGAAAATA 33879 | ||| || | ||||| |||||||| ||| Sbjct 42516386 TTCCCAAATTTGTGGGTATTGAATTGGGAACATA 42516419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622657576273040