Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2 105 2e-17 seq155 93.3 1e-13 seq7 91.5 4e-13 >seq2 Length=96359640 Score = 105 bits (116), Expect = 2e-17 Identities = 308/471 (65%), Gaps = 5/471 (1%) Strand=Plus/Minus Query 22481 CATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCAT 22540 |||| ||||| ||| | ||||||||||| || ||||| ||||| || |||||| | Sbjct 42516006 CATTTGCGGAGCGTTTGGTTGCATTTGCTTGTGTGGAAGGTATTTTTTTCTCTGGAAGCT 42515947 Query 22541 TTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATG 22600 | ||||| || || ||| ||||||| || | | ||||| || |||| || || || | Sbjct 42515946 TCTGTGCTATATTCTGGTTAAAAAAGCGGGGGTTAATGCCTGGATTAACTTTCTCGAACG 42515887 Query 22601 AGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATC 22660 |||||||| | || |||||| | || ||||| || ||| |||| ||| | | Sbjct 42515886 AGTTAATTTCAAGGGACGAGGGTTTGCACTGTGATTTCGCTTGTTTGCTTTAT---AGTT 42515830 Query 22661 ATATCATTCATAAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAAC 22720 | | || ||| | | ||| || | ||| || || |||| || || Sbjct 42515829 TGTTAAGGACGAAGCTTACTGAGGAACGAGTTAAGGGAATTGTTGCAGATGCTGTGGAGA 42515770 Query 22721 TTGAACGTCTATTTATTTGCGAGGCGTTACC-AGTAAGTCTCATTGGTATCAATGCCGAA 22779 | ||| | ||| | || || ||| | || || | || | || || |||| || Sbjct 42515769 TAGAAAGGGAGTTTGTGTGTGACGCGCTGCCTTGTGCG-CTGGTGGGAATGAATGGAGAT 42515711 Query 22780 TCAATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCA 22839 | ||||| | ||| ||| ||||||| || ||| | | || | | | ||||||| Sbjct 42515710 TTGATGAGCAAATACATTGAATTTGTGGCTGATAGATTGTTGGATGCTTTGGGTTATGAT 42515651 Query 22840 AAGCATTATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAG 22899 ||| || || | ||||| ||||| |||||||| || ||| | |||| ||| Sbjct 42515650 AAGTTGTACAATGCTCAGAATCCGTTTGATTGGATGGAGCTGATTAGTTTACAAGGGAAG 42515591 Query 22900 ACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATG 22950 || |||||||| || || |||||||| || || || || || ||||||| Sbjct 42515590 ACTAATTTCTTTGAGAAGAGAGTTGGGGAGTATCAGAAGGCTTCTGTTATG 42515540 >seq155 Length=843148 Score = 93.3 bits (102), Expect = 1e-13 Identities = 157/221 (71%), Gaps = 5/221 (2%) Strand=Plus/Minus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || ||| || ||||| || | ||| || |||||| | |||||| ||||| | Sbjct 127869 ATGAAAGAGGATAGTATTGAGGGAATATATGATACTCTTAAGGAGTGTGCTGTTATTAGC 127810 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACAT 363740 || || || |||||||| || || | ||||| | ||||| || | |||||||| Sbjct 127809 AAATCAGCTGGGGGAATTGGAGTTTCTGTGCACAACATACGTGCTACTGGG-AGTTACAT 127751 Query 363741 TCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATA 363799 ||| || || | |||| | |||||||| | ||||| ||||| ||||| || | | | Sbjct 127750 TCGTGGAACAAATGGGACA-TCGAATGGAATTGTTCCTATGCTGCGTGTATTCAATGACA 127692 Query 363800 CTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 |||| || || || ||||| || || || || | |||||| Sbjct 127691 CTGCTAGATATGTTGACCAAGGAGGTGGCAAAAG-AAAGGG 127652 >seq7 Length=114765206 Score = 91.5 bits (100), Expect = 4e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761 |||||||||||| | | ||| | | || || || ||||||||||||||||||||||| Sbjct 108616682 CAGTTTTATGTAGCCAATGGGGAGTTATCCTGTCAGATGTATCAGCGATCTGCTGATATG 108616623 Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 ||||| || || || ||||| |||||| ||| || | || || ||| | || |||||| Sbjct 108616622 GGTCTGGGAGTGCCATTTAACATTGCATCTTATGCCTTGCTGACATGCATGATAGCTCAT 108616563 Query 111822 TTT 111824 || Sbjct 108616562 GTT 108616560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302732489285708