Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15]
37,194 sequences; 2,365,682,703 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq6 104 2e-17
seq1 98.7 9e-16
seq1629 95.1 1e-14
seq854 91.5 1e-13
seq12110 84.2 2e-11
>seq6
Length=97571839
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | ||||| || ||| | || ||||| | ||||| | || || ||| |
Sbjct 19649333 ATGCAAATCTTTGTTAAGACACTCACAGGAAAGACCATTACACTTGAGGTTGAGAGCTGT 19649392
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|||||||| || | || ||| ||| ||| ||||||||||| || ||||| ||||||
Sbjct 19649393 GACACCATTGACAATGTTAAAACAAAAATTCAAGACAAAGAAGGAATTCCTCCAGATCAA 19649452
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
|| || | |||| | || || ||||| ||||||| ||| | | |||||||||
Sbjct 19649453 CAAAGGTTAATTTTTGCTGGAAAACAACTTGAAGATGGTCGAACACTGACTGATTATAAC 19649512
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202
||||| || ||||| || | ||| | |||||
Sbjct 19649513 ATTCAGAAGGAATCCACTCTCCATCTTGTGTT 19649544
>seq1
Length=110538649
Score = 98.7 bits (108), Expect = 9e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | ||||| || ||||| || || ||| | || ||| | ||||| ||| |
Sbjct 14110420 ATGCAGATCTTTGTGAAGACATTGACAGGGAAAACTATCACCCTTGAAGTTGAGAGCTCG 14110479
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||||||||| | || || || ||| ||||| ||||| || || || || ||
Sbjct 14110480 GACACCATCGACAATGTGAAGGCTAAAATTCAAGACAAGGAAGGAATCCCACCTGACCAG 14110539
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||||| |||||| | || ||||| || || || | || | | |||||||||
Sbjct 14110540 CAGAGGTTGATTTTTGCAGGGAAGCAGCTTGAGGACGGGAGGACTCTTGCTGATTATAAC 14110599
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217
|| || ||||| || ||| | ||||| ||| | |||||||||||||
Sbjct 14110600 ATCCAGAAAGAGTCCACACTCCATTTGGTGCTCCGATTGAGAGGAGG 14110646
Score = 95.1 bits (104), Expect = 1e-14
Identities = 149/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | ||||| ||||| || ||||| ||| | ||||| | ||||| ||| |
Sbjct 14110192 ATGCAAATCTTTGTGAAAACCTTGACTGGGAAAACTATTACTCTTGAAGTTGAGAGCTCG 14110251
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||||||||| | || || ||| ||| || || ||||| || || || || ||
Sbjct 14110252 GACACCATCGACAATGTGAAGGCAAAAATTCAAGATAAGGAAGGGATTCCACCTGACCAG 14110311
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169
||||| || |||| | || ||||| || || |||| || || | ||| ||||| ||
Sbjct 14110312 CAGAGGCTTATTTTTGCTGGGAAGCAGCTTGAGGATGGAAG-GACTTTAGCTGATTACAA 14110370
Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTG 24200
||| || || ||||| || | ||||| |||
Sbjct 14110371 CATCCAGAAGGAATCAACCCTCCATTTGGTG 14110401
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049
||||||| | ||||| || || |||||||||||| | || || | ||||| ||| |
Sbjct 85490099 AATGCAAATCTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAAGTTGAGAGCTC 85490158
Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109
||||| || || | || || || ||| ||||| |||||||| || || |||||
Sbjct 85490159 GGACACGATAGACAATGTTAAGGCCAAAATTCAAGACAAGGAAGGCATTCCACCGGATCA 85490218
Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169
||||| ||||||| | || || ||| | ||||| | || | | || |||||
Sbjct 85490219 GCAGAGGCTGATTTTTGCTGGGAAACAATTGGAAGACGGGAGGACTCTTGCTGACTATAA 85490278
Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199
||||||||| || || ||| | || ||||
Sbjct 85490279 CATTCAAAAGGAGTCAACACTCCACCTAGT 85490308
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049
||||||| | ||||| || || |||||||||||| | || || | ||||| ||| |
Sbjct 86551083 AATGCAAATTTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAAGTTGAGAGCTC 86551024
Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109
||||| || || | || || || ||| ||||| || || || || || |||||
Sbjct 86551023 GGACACGATAGACAATGTTAAGGCTAAAATTCAAGACAAGGAGGGTATCCCACCGGATCA 86550964
Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169
||||| ||||||| | || |||||| | ||||||| ||| | ||||||||
Sbjct 86550963 GCAGAGGCTGATTTTTGCTGGGAAGCAATTAGAAGATGGACGAACTCTGGCTGATTATAA 86550904
Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217
||| || || ||||| || |||| | || | || ||||| || ||
Sbjct 86550903 CATCCAGAAGGAATCCACCCTTCACCTTGTTCTCAGGTTGAGGGGTGG 86550856
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | ||||||||||| || || ||||| | |||||| | || || ||| |
Sbjct 14109964 ATGCAGATCTTTGTAAAAACTTTGACAGGAAAGACTATTACCCTTGAGGTTGAGAGTTCC 14110023
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|| || || || | |||||| || || || ||||||||||| ||||| |||||
Sbjct 14110024 GATACAATTGACAATGTCAAAGCTAAAATCCAGGATAAAGAAGGCATTCCTCCAGATCAG 14110083
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||||| |||| | || || |||||||| || |||| | | | | || || ||
Sbjct 14110084 CAGAGGTTGATCTTCGCTGGAAAGCAACTTGAGGATGGTCGTACCCTTGCTGACTACAAT 14110143
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217
||||| || ||||| || | ||| | ||| | || |||| || ||
Sbjct 14110144 ATTCAGAAGGAATCCACTCTCCATCTGGTGCTGAGGCTGAGGGGTGG 14110190
>seq1629
Length=244661
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | ||||| || ||| | || ||||| | ||||| | || ||||||
Sbjct 133917 ATGCAGATCTTTGTTAAGACACTTACCGGAAAGACTATTACTCTTGAGGTCGAGAGTTCT 133976
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|||||||| || | |||||| |||||| ||||| ||||| || ||||| |||||
Sbjct 133977 GACACCATTGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAG 134036
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||||||||||| | | ||| || || || ||||||| | ||| | || || |||
Sbjct 134037 CAGAGACTGATCTTTGCCGGAAAACAGCTTGAAGATGGCCGAACTCTTGCTGACTACAAC 134096
Query 24171 ATTCAAAAAGAATCTAC 24187
|| ||||| || |||||
Sbjct 134097 ATCCAAAAGGAGTCTAC 134113
Score = 87.8 bits (96), Expect = 2e-12
Identities = 117/163 (72%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | ||||| ||||| | || ||||| | ||||| | || |||||| |
Sbjct 134145 ATGCAAATCTTTGTTAAAACTCTGACCGGAAAGACTATTACTCTTGAGGTCGAGAGCTCA 134204
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|||||||| || | ||||| |||||| || || || || || ||||| ||||||
Sbjct 134205 GACACCATTGACAATGTCAAGGCAAAGATCCAGGATAAGGAGGGTATTCCTCCTGATCAA 134264
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA 24153
|| || |||||| | ||||||||||| ||||||| ||||
Sbjct 134265 CAAAGGTTGATTTTTGCTGGCAAGCAACTTGAAGATGGTAGAA 134307
>seq854
Length=364260
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | |||||||| ||| | || |||||| | ||||| |||| || ||| |
Sbjct 69041 ATGCAAATCTTTGTAAAGACACTCACCGGAAAAACCATTACTCTCGAGGTTGAGAGTTCC 69100
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||| || || | ||||| |||||| ||||| ||||| || |||||||||||
Sbjct 69101 GACACTATTGATAATGTCAAGGCTAAGATTCAGGACAAGGAAGGAATTCCTCCCGATCAG 69160
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||||| |||| | | || ||||| || || |||| | | | | || || |||
Sbjct 69161 CAGAGGTTGATCTTTGCTGGAAAGCAGCTAGAGGATGGCCGCACTCTTGCAGACTACAAC 69220
Query 24171 ATTCAAAAAGAATCTACAATTCA 24193
|| ||||| ||||| || ||||
Sbjct 69221 ATCCAAAAGGAATCCACCCTTCA 69243
>seq12110
Length=10092
Score = 84.2 bits (92), Expect = 2e-11
Identities = 110/150 (73%), Gaps = 3/150 (2%)
Strand=Plus/Minus
Query 24079 TTACC--GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCA 24136
||||| || ||||||||||||||||| ||||| ||||||||||||| | || || ||
Sbjct 4562 TTACCAGGATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGGAAACA 4503
Query 24137 ACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTT 24196
| ||||||| | | | | ||||| |||||||| |||||||| || |||| |
Sbjct 4502 GTTGGAAGATGGGCGGACCCTGGCTGATTACAACATTCAGAAAGAATCAACTCTTCACCT 4443
Query 24197 AGTGTTAAGATTGAGAGGAGG-ACTATAAT 24225
|| || || | || ||||| ||||| ||
Sbjct 4442 TGTTTTGAGGCTCAGGGGAGGAACTATGAT 4413
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429741109205070
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |