Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq6 104 2e-17 seq1 98.7 9e-16 seq1629 95.1 1e-14 seq854 91.5 1e-13 seq12110 84.2 2e-11 >seq6 Length=97571839 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || ||| | || ||||| | ||||| | || || ||| | Sbjct 19649333 ATGCAAATCTTTGTTAAGACACTCACAGGAAAGACCATTACACTTGAGGTTGAGAGCTGT 19649392 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | || ||| ||| ||| ||||||||||| || ||||| |||||| Sbjct 19649393 GACACCATTGACAATGTTAAAACAAAAATTCAAGACAAAGAAGGAATTCCTCCAGATCAA 19649452 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || | |||| | || || ||||| ||||||| ||| | | ||||||||| Sbjct 19649453 CAAAGGTTAATTTTTGCTGGAAAACAACTTGAAGATGGTCGAACACTGACTGATTATAAC 19649512 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 ||||| || ||||| || | ||| | ||||| Sbjct 19649513 ATTCAGAAGGAATCCACTCTCCATCTTGTGTT 19649544 >seq1 Length=110538649 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || ||||| || || ||| | || ||| | ||||| ||| | Sbjct 14110420 ATGCAGATCTTTGTGAAGACATTGACAGGGAAAACTATCACCCTTGAAGTTGAGAGCTCG 14110479 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || || ||| ||||| ||||| || || || || || Sbjct 14110480 GACACCATCGACAATGTGAAGGCTAAAATTCAAGACAAGGAAGGAATCCCACCTGACCAG 14110539 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||||| | || ||||| || || || | || | | ||||||||| Sbjct 14110540 CAGAGGTTGATTTTTGCAGGGAAGCAGCTTGAGGACGGGAGGACTCTTGCTGATTATAAC 14110599 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || ||||| || ||| | ||||| ||| | ||||||||||||| Sbjct 14110600 ATCCAGAAAGAGTCCACACTCCATTTGGTGCTCCGATTGAGAGGAGG 14110646 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| || ||||| ||| | ||||| | ||||| ||| | Sbjct 14110192 ATGCAAATCTTTGTGAAAACCTTGACTGGGAAAACTATTACTCTTGAAGTTGAGAGCTCG 14110251 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || ||| ||| || || ||||| || || || || || Sbjct 14110252 GACACCATCGACAATGTGAAGGCAAAAATTCAAGATAAGGAAGGGATTCCACCTGACCAG 14110311 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| || |||| | || ||||| || || |||| || || | ||| ||||| || Sbjct 14110312 CAGAGGCTTATTTTTGCTGGGAAGCAGCTTGAGGATGGAAG-GACTTTAGCTGATTACAA 14110370 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||| || || ||||| || | ||||| ||| Sbjct 14110371 CATCCAGAAGGAATCAACCCTCCATTTGGTG 14110401 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| || || |||||||||||| | || || | ||||| ||| | Sbjct 85490099 AATGCAAATCTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAAGTTGAGAGCTC 85490158 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || || | || || || ||| ||||| |||||||| || || ||||| Sbjct 85490159 GGACACGATAGACAATGTTAAGGCCAAAATTCAAGACAAGGAAGGCATTCCACCGGATCA 85490218 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||| ||||||| | || || ||| | ||||| | || | | || ||||| Sbjct 85490219 GCAGAGGCTGATTTTTGCTGGGAAACAATTGGAAGACGGGAGGACTCTTGCTGACTATAA 85490278 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||||||| || || ||| | || |||| Sbjct 85490279 CATTCAAAAGGAGTCAACACTCCACCTAGT 85490308 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| || || |||||||||||| | || || | ||||| ||| | Sbjct 86551083 AATGCAAATTTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAAGTTGAGAGCTC 86551024 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || || | || || || ||| ||||| || || || || || ||||| Sbjct 86551023 GGACACGATAGACAATGTTAAGGCTAAAATTCAAGACAAGGAGGGTATCCCACCGGATCA 86550964 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||| ||||||| | || |||||| | ||||||| ||| | |||||||| Sbjct 86550963 GCAGAGGCTGATTTTTGCTGGGAAGCAATTAGAAGATGGACGAACTCTGGCTGATTATAA 86550904 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| || || ||||| || |||| | || | || ||||| || || Sbjct 86550903 CATCCAGAAGGAATCCACCCTTCACCTTGTTCTCAGGTTGAGGGGTGG 86550856 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||||||||| || || ||||| | |||||| | || || ||| | Sbjct 14109964 ATGCAGATCTTTGTAAAAACTTTGACAGGAAAGACTATTACCCTTGAGGTTGAGAGTTCC 14110023 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | |||||| || || || ||||||||||| ||||| ||||| Sbjct 14110024 GATACAATTGACAATGTCAAAGCTAAAATCCAGGATAAAGAAGGCATTCCTCCAGATCAG 14110083 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | || || |||||||| || |||| | | | | || || || Sbjct 14110084 CAGAGGTTGATCTTCGCTGGAAAGCAACTTGAGGATGGTCGTACCCTTGCTGACTACAAT 14110143 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| || ||||| || | ||| | ||| | || |||| || || Sbjct 14110144 ATTCAGAAGGAATCCACTCTCCATCTGGTGCTGAGGCTGAGGGGTGG 14110190 >seq1629 Length=244661 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || ||| | || ||||| | ||||| | || |||||| Sbjct 133917 ATGCAGATCTTTGTTAAGACACTTACCGGAAAGACTATTACTCTTGAGGTCGAGAGTTCT 133976 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | |||||| |||||| ||||| ||||| || ||||| ||||| Sbjct 133977 GACACCATTGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAG 134036 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||||||||| | | ||| || || || ||||||| | ||| | || || ||| Sbjct 134037 CAGAGACTGATCTTTGCCGGAAAACAGCTTGAAGATGGCCGAACTCTTGCTGACTACAAC 134096 Query 24171 ATTCAAAAAGAATCTAC 24187 || ||||| || ||||| Sbjct 134097 ATCCAAAAGGAGTCTAC 134113 Score = 87.8 bits (96), Expect = 2e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| | || ||||| | ||||| | || |||||| | Sbjct 134145 ATGCAAATCTTTGTTAAAACTCTGACCGGAAAGACTATTACTCTTGAGGTCGAGAGCTCA 134204 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | ||||| |||||| || || || || || ||||| |||||| Sbjct 134205 GACACCATTGACAATGTCAAGGCAAAGATCCAGGATAAGGAGGGTATTCCTCCTGATCAA 134264 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA 24153 || || |||||| | ||||||||||| ||||||| |||| Sbjct 134265 CAAAGGTTGATTTTTGCTGGCAAGCAACTTGAAGATGGTAGAA 134307 >seq854 Length=364260 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | |||||||| ||| | || |||||| | ||||| |||| || ||| | Sbjct 69041 ATGCAAATCTTTGTAAAGACACTCACCGGAAAAACCATTACTCTCGAGGTTGAGAGTTCC 69100 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | ||||| |||||| ||||| ||||| || ||||||||||| Sbjct 69101 GACACTATTGATAATGTCAAGGCTAAGATTCAGGACAAGGAAGGAATTCCTCCCGATCAG 69160 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | | || ||||| || || |||| | | | | || || ||| Sbjct 69161 CAGAGGTTGATCTTTGCTGGAAAGCAGCTAGAGGATGGCCGCACTCTTGCAGACTACAAC 69220 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || ||||| ||||| || |||| Sbjct 69221 ATCCAAAAGGAATCCACCCTTCA 69243 >seq12110 Length=10092 Score = 84.2 bits (92), Expect = 2e-11 Identities = 110/150 (73%), Gaps = 3/150 (2%) Strand=Plus/Minus Query 24079 TTACC--GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCA 24136 ||||| || ||||||||||||||||| ||||| ||||||||||||| | || || || Sbjct 4562 TTACCAGGATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGGAAACA 4503 Query 24137 ACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTT 24196 | ||||||| | | | | ||||| |||||||| |||||||| || |||| | Sbjct 4502 GTTGGAAGATGGGCGGACCCTGGCTGATTACAACATTCAGAAAGAATCAACTCTTCACCT 4443 Query 24197 AGTGTTAAGATTGAGAGGAGG-ACTATAAT 24225 || || || | || ||||| ||||| || Sbjct 4442 TGTTTTGAGGCTCAGGGGAGGAACTATGAT 4413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429741109205070