Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq6 111 1e-19 seq12110 93.3 4e-14 seq1 86.0 5e-12 >seq6 Length=97571839 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||| || || ||||| ||||| |||||||| | || ||| | | Sbjct 19649333 ATGCAAATCTTTGTTAAGACACTCACAGGAAAGACCATTACACTTGAGGTTGAGAGCTGT 19649392 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| |||| || ||| ||||||| || |||||||| | || ||||| Sbjct 19649393 GACACCATTG-ACAATGTTAAAACAAAAATTCAAGACAAAGAAGGAATTCCTCCAGATCA 19649451 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||||| | |||| ||| || |||||| | ||||||| ||| || | |||||||| Sbjct 19649452 ACAAAGGTTAATTTTTGCTGGAAAACAACTTGAAGATGGTCGAACACTGACTGATTATAA 19649511 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||| || || || ||| | ||| | |||||| | | || ||||| Sbjct 19649512 CATTCAGAAGGAATCCACTCTCCATCTTGTGTTGCGTCTTCGTGGAGG 19649559 >seq12110 Length=10092 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 |||||||||||| | || ||||||||| ||||| |||| ||| || ||||| || ||| Sbjct 4555 GATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGGAAACAGTTGGAA 4496 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| ||| |||| ||||| |||||||| ||||| || ||| | || | || ||| Sbjct 4495 GATGGGCGGACCCTGGCTGATTACAACATTCAGAAAGAATCAACTCTTCACCTTGTTTTG 4436 Query 115499 AGATTGCGAGGAGGAA 115514 || | | ||||||| Sbjct 4435 AGGCTCAGGGGAGGAA 4420 >seq1 Length=110538649 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||| ||||| || || | || |||||||| || || | ||| ||| | Sbjct 85490099 AATGCAAATCTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAAGTTGAGAGCTC 85490158 Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 ||||| | | ||||| || || |||||| || || |||||| | || |||| Sbjct 85490159 GGACAC-GATAGACAATGTTAAGGCCAAAATTCAAGACAAGGAAGGCATTCCACCGGATC 85490217 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 |||| || || |||| ||| || |||||||| ||||| | | || | || || |||| Sbjct 85490218 AGCAGAGGCTGATTTTTGCTGGGAAACAATTGGAAGACGGGAGGACTCTTGCTGACTATA 85490277 Query 115464 ACATTCAAAAAGAGTCTAC 115482 |||||||||| ||||| || Sbjct 85490278 ACATTCAAAAGGAGTCAAC 85490296 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||||||||| || || | || |||||||| || || | ||| ||| | Sbjct 86551083 AATGCAAATTTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAAGTTGAGAGCTC 86551024 Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 ||||| | | ||||| || || |||||| || || || || |||| |||| Sbjct 86551023 GGACAC-GATAGACAATGTTAAGGCTAAAATTCAAGACAAGGAGGGTATCCCACCGGATC 86550965 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 |||| || || |||| ||| || || ||||||||||||| ||| |||| ||||||| Sbjct 86550964 AGCAGAGGCTGATTTTTGCTGGGAAGCAATTAGAAGATGGACGAACTCTGGCTGATTATA 86550905 Query 115464 ACATTCAAAAAGAGTCTAC 115482 |||| || || || || || Sbjct 86550904 ACATCCAGAAGGAATCCAC 86550886 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||| ||| | ||||| | || || ||||||||||| | ||| ||| | Sbjct 85489643 AATGCAAATCTTTATTAAAACCTTAACCGGGAAAACCATTACATTAGAAGTTGAGAGCTC 85489702 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| | || || ||||| ||||| ||||| |||| || || Sbjct 85489703 GGACACAATTGATAATGTTAAGGCGAAAATCCAAGATAAGGAAGGTATCCCGTCAGACCA 85489762 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || || |||| ||| || || ||||||||||||| ||| |||| |||||||| Sbjct 85489763 GCAGAGGCTGATTTTTGCTGGGAAGCAATTAGAAGATGGACGAACTCTGGCTGATTATAA 85489822 Query 115465 CATTCAAAAAGAGTCTAC 115482 ||| || || || || || Sbjct 85489823 CATCCAGAAGGAATCCAC 85489840 Score = 82.4 bits (90), Expect = 6e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 115400 GATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGAT 115459 || ||||||||| | |||| ||| || |||||||||||||||| | ||| | || ||| Sbjct 86550742 GACCAGCAAAGATTGATTTTTGCAGGGAAACAATTAGAAGATGGAAGAACTCTAGCTGAT 86550683 Query 115460 TATAACATTCAAAAAGAGTCTAC 115482 |||||||||||||| ||||| || Sbjct 86550682 TATAACATTCAAAAGGAGTCGAC 86550660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425151190767280