Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq2 102 7e-17 seq1 95.1 1e-14 seq1898 87.8 1e-12 seq8 86.0 5e-12 seq854 82.4 6e-11 >seq2 Length=96359640 Score = 102 bits (112), Expect = 7e-17 Identities = 154/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || ||||||||||| || |||||||| || || | |||| | | || Sbjct 95422845 AGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGCTAGGGTTCGGCCATCT 95422786 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | ||||| || || |||| |||| ||| |||||| || | ||| || ||||| Sbjct 95422785 TCAAGCTGTTTTCCGGCGAAAATGAGCCTCTGCTGGTCCGGTGGGATGCCTTCCTTGTCC 95422726 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || ||||| |||||| | | | | |||||| || || || | |||||||| Sbjct 95422725 TGGATCTTTGC--CTTCACGTTGTCGATTGTGTCGGAGGATTCGACCTCAAGGGTGATGG 95422668 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 | || || ||||| ||||| || || |||||||| || Sbjct 95422667 TCTTACCCGTCAGGGTTTTCACGAAGATCTGCATCTT 95422631 >seq1 Length=110538649 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 16720 CCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGC 16779 |||||| || | ||| ||||| |||||||| || || |||||||| |||| || | | Sbjct 86550413 CCTCAGCACAAGATGGAGCGTAGACTCCTTCTGGATATTGTAGTCTGCCAGTGTCCTACC 86550472 Query 16780 GTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTT 16839 |||||||| ||||| || ||| | || |||| ||| ||||| || | || || || Sbjct 86550473 ATCCTCCAACTGTTTTCCAGCAAAGATGAGCCTCTGCTGGTCGGGCGGAATACCTTCCTT 86550532 Query 16840 GTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGAT 16899 || || | | |||||| | | | | ||||| | ||| ||| | ||||| Sbjct 86550533 ATCCCGTATCTTCGCCTTCACATTGTCAATCGTGTCTGAGCTCTCAACTTCTAATGTGAT 86550592 Query 16900 GGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||||||||| || | ||||| ||||| || |||||| Sbjct 86550593 GGTTTTTCCCGTTAAGGTTTTAACAAAGATTTGCATT 86550629 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || ||||||||||| ||||| ||||| || | || | |||| ||||||||| Sbjct 85490302 TGGAGTGTTGACTCCTTTTGAATGTTATAGTCAGCAAGAGTCCTCCCGTCTTCCAATTGT 85490243 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || ||| |||| |||| ||| || ||| || | ||| || ||||| ||||| Sbjct 85490242 TTCCCAGCAAAAATCAGCCTCTGCTGATCCGGTGGAATGCCTTCCTTGTCTTGAATTTTG 85490183 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | | ||||| | ||| ||||| ||||| |||||||| || Sbjct 85490182 GCCTTAACATTGTCTATCGTGTCCGAGCTCTCAACTTCCAACGTGATTGTTTTTCCAGTT 85490123 Query 16913 AGCGTTTTGACAAAAATCTGCATT 16936 | || || ||||| || |||||| Sbjct 85490122 AAGGTCTTAACAAAGATTTGCATT 85490099 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || ||||| ||||||||||| || || || || |||| || | || |||||||| Sbjct 86551108 TGGAGCGTTGACTCCTTTTGAATATTATAATCTGCCAGAGTGCGCCCATCTTCCAATTGC 86551167 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || ||| |||| |||| ||||||||| || | || || || || ||||| | Sbjct 86551168 TTCCCAGCAAAAATCAGCCTTTGTTGGTCCGGTGGAATACCTTCCTTATCTTGAATTTTC 86551227 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | |||||| | ||| ||||| ||||| |||||||| ||| Sbjct 86551228 GCCTTAACGTTATCAATAGTGTCCGAGCTCTCAACTTCCAATGTGATTGTTTTTCCAGTC 86551287 Query 16913 AGCGTTTTGACAAAAATCTGCATT 16936 | || || ||||| || |||||| Sbjct 86551288 AATGTCTTAACAAATATTTGCATT 86551311 >seq1898 Length=217218 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||| |||||||| || ||||| || || | ||| | ||||||| || Sbjct 79073 TGGAGTGTGGATTCCTTTTGGATATTGTAATCTGCAAGGGTGCGCCCATCCTCCAGCTGC 79014 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || ||| | || |||| ||| || || || | || ||||| || ||||| Sbjct 79013 TTACCAGCAAATATGAGCCTCTGCTGATCTGGTGGGATCCCTTCTTTATCCTGAATTTTG 78954 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | | |||||| | |||| ||||| |||||||| ||||| ||| Sbjct 78953 GCCTTGACGTTGTCAATAGTGTCAGAGCTCTCCACTTCCAAAGTGATGGTCTTTCCTGTC 78894 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 | ||||||||||| |||||||| Sbjct 78893 AAAGTTTTGACAAATATCTGCAT 78871 >seq8 Length=47755514 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || ||||||||||| || || ||||| || || | || | | || Sbjct 5427081 AGCACCAAATGAAGGGTGGACTCCTTCTGAATATTGTAATCAGCTAAAGTCCTTCCATCT 5427140 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 ||||| ||||| || ||| | || | || ||| || || || | ||||| ||||| Sbjct 5427141 TCCAACTGTTTACCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCC 5427200 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | ||| || | | | | |||||| | || ||| | |||||| ||| Sbjct 5427201 TGAATCTTAGCCTTGACGTTGTCAATTGTGTCGGAGCTTTCGACTTCAAGGGTGATTGTT 5427260 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||||| ||| || |||||||||||||| Sbjct 5427261 TTCCCGGTCAACGTCTTCACAAAAATCTGCAT 5427292 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| || |||||||| || || || || || |||| || | | || |||||||| Sbjct 5426634 TGCAGAGTTGACTCCTTCTGAATATTATAATCAGCCAGAGTCCTTCCATCTTCCAATTGC 5426693 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || ||| |||| |||| ||| || ||| || | ||||| ||||| ||| | Sbjct 5426694 TTCCCAGCAAAAATCAGCCTCTGCTGATCCGGCGGGATACCCTCCTTGTCCTGAATCTTA 5426753 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | | || || |||| |||| |||||||||||| || ||| Sbjct 5426754 GCCTTCACATTGTCGATCGTATCAGAACTCTCCACCTCCAAGGTGATGGTTTTCCCCGTC 5426813 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 | || || || ||||||||||| Sbjct 5426814 AAAGTCTTCACGAAAATCTGCAT 5426836 >seq854 Length=364260 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || |||||||| || || || ||||||||||| | || | ||||| | || Sbjct 69471 TGAAGGGTGGACTCTTTCTGAATATTGTAGTCGGCAAGAGTGCGCCCATCCTCAAGCTGC 69412 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || ||| |||| | || ||| ||||| ||| | ||| || ||||| || | | Sbjct 69411 TTTCCAGCAAAAATCAACCTCTGCTGGTCTGGAGGGATGCCTTCCTTGTCCTGGATCTTC 69352 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | | |||||| | ||| || | ||||||||| || |||||| Sbjct 69351 GACTTAACATTGTCAATGGTGTCGGAGCTCTCAACCTCAAGGGTGATGGTCTTCCCGGTC 69292 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 | ||||| |||||||||||||| Sbjct 69291 AATGTTTTTACAAAAATCTGCAT 69269 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || |||||||||||||| | || | ||||| | || Sbjct 69699 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTGCGCCCATCCTCAAGCTGC 69640 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || ||| | || | || ||| || || ||| | ||| |||||||| || | | Sbjct 69639 TTTCCAGCAAAGATCAACCTCTGCTGATCTGGAGGGATGCCTTCTTTGTCCTGGATCTTC 69580 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | | |||||| | ||| || | ||||||||| || || ||| Sbjct 69579 GCCTTAACATTGTCAATGGTGTCGGAGCTCTCAACCTCAAGGGTGATGGTCTTCCCAGTC 69520 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 | ||||| |||||||||||||| Sbjct 69519 AAAGTTTTCACAAAAATCTGCAT 69497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404904372850060