Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2 172 6e-38 seq1 91.5 2e-13 seq902 89.7 6e-13 seq5 89.7 6e-13 seq3723 86.0 7e-12 seq10 86.0 7e-12 seq5715 84.2 2e-11 seq3240 84.2 2e-11 seq1237 84.2 2e-11 seq1984 82.4 8e-11 >seq2 Length=96359640 Score = 172 bits (190), Expect = 6e-38 Identities = 588/901 (65%), Gaps = 28/901 (3%) Strand=Plus/Plus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 ||||||| | || || || ||||||||| | || ||||||||||| ||||| |||| Sbjct 42515540 CATAACAGAAGCCTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTG 42515599 Query 92850 CAAAGATATCGAATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGAT 92907 ||| ||| | || | | | ||||||| || || || |||| ||| Sbjct 42515600 TAAACTAATCAGCTCCATCCAATCAAACGGATTCTGAGCATTGTACAACTTATCATAACC 42515659 Query 92908 CAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATT 92967 ||| | | ||| ||||||||||| |||||||| ||||| | ||||||||| | ||| Sbjct 42515660 CAAAGCATCCAACAATCTATCAGCCACAAATTCAATGTATTTGCTCATCAAATCTCCATT 42515719 Query 92968 CATTCCTAGAAGACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGG 93026 |||||| | || || ||| || || ||||| || || || | || || | || | Sbjct 42515720 CATTCCCACCAG-CGCACAAGGCAGCGCGTCACACACAAACTCCCTTTCTATCTCCACAG 42515778 Query 93027 CTTCTTTCAAGATTTCTATTA-CTCTACTATTTGGTGGTTTTTGTACG--ACATAATTGT 93083 | ||| ||| | ||| ||| ||| | | || || || | ||| || | | Sbjct 42515779 CATCTG-CAACAATTCCCTTAACTCGT-TCCTCAGTAAGCTTCGTCCTTAACA-AACTAT 42515835 Query 93084 ACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGA 93143 | | || || || || || || ||||| ||||| | ||| || ||||| || || Sbjct 42515836 AAAGCAAACAAGCGAAATCACAGTGCAAACCCTCGTCCCTTGAAATTAACTCGTTCGAGA 42515895 Query 93144 ATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAG 93203 | ||||| || || | | || || || || | ||| ||||| | | || || |||| Sbjct 42515896 AAGTTAATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAGCACAGAAGCTTCCAG 42515955 Query 93204 aaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAAT 93263 | ||||| ||||||||||| |||||||| || | ||| || ||||| || |||| Sbjct 42515956 AGAAAAAAATACCTTCCACACAAGCAAATGCAACCAAACGCTCCGCAAATGTTTCGGA-- 42516013 Query 93264 TACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGA 93323 || | |||||| || ||||| | || || |||| || ||| || | || || | Sbjct 42516014 -ACCGTCGATCCAACGTAGTGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAA 42516072 Query 93324 TAGCGTTAAATAGGTAATCTCGC-----TCGTCCGAATCTCGTATGTATGTATCGATTAA 93378 ||| || |||||| || ||||| || || ||||| | || | | Sbjct 42516073 CTGCGCGGAA----TAATCT-GCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAG 42516127 Query 93379 CAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCT 93438 |||| ||||| || || |||| || || || || |||||||| ||||||||| | Sbjct 42516128 CAGACTGTACATCTCGGAGTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACG 42516187 Query 93439 AGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACC 93498 || || | | || ||||||| || || | | || ||||| || || || Sbjct 42516188 CGCCTCGGCAACTTGGACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCC 42516247 Query 93499 ATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAG 93558 ||||| || |||||||| || | | || | || ||||| | ||| | | || Sbjct 42516248 GTCGGAGGCGGCAAAAAAGGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGGGTTAG 42516307 Query 93559 CTTATCCCAAT--CGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGAT 93616 | ||||| | ||| | ||| || | |||||||||||| ||||||| || || Sbjct 42516308 GGTTTCCCAGTGACGGTT--ATCGGAAGATAAATCGACTTCTTCAGCAGTCCAGAAAGAG 42516365 Query 93617 GCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAA 93676 || |||||||||||||| ||||| || | | | ||||||||||| || || ||| || Sbjct 42516366 GCCAAGGCTTTTTTGTACATTTCCCAAATTTGTGGGTATTGAATTGGGAACAT-ACAGAA 42516424 Query 93677 C 93677 | Sbjct 42516425 C 42516425 >seq1 Length=110538649 Score = 91.5 bits (100), Expect = 2e-13 Identities = 75/90 (83%), Gaps = 6/90 (7%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 84022031 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 84021974 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATT 126351 ||||||||| || ||||| |||||||||| Sbjct 84021973 CGTGGGTTCAAATCCCACTTCTGACAAATT 84021944 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 15351010 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 15351067 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 15351068 GCGTGGGTTCAAATCCCACTTCTGACA 15351094 >seq902 Length=352816 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/91 (82%), Gaps = 6/91 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 111278 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 111221 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATT 126351 |||||||||| || ||||| ||||||| || Sbjct 111220 GCGTGGGTTCAAATCCCACTTCTGACAATTT 111190 >seq5 Length=57012777 Score = 89.7 bits (98), Expect = 6e-13 Identities = 80/99 (81%), Gaps = 6/99 (6%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA--- 126320 |||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 3995193 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAG 3995250 Query 126321 -GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTG 126358 |||||||||| || ||||| |||||||| || | ||| Sbjct 3995251 GGCGTGGGTTCAAATCCCACTTCTGACAAAGTAATTTTG 3995289 >seq3723 Length=114799 Score = 86.0 bits (94), Expect = 7e-12 Identities = 72/87 (83%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 51466 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 51409 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 51408 GCGTGGGTTCAAATCCCACTTCTGACA 51382 >seq10 Length=51082206 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/89 (82%), Gaps = 6/89 (7%) Strand=Plus/Minus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA--- 126320 |||| ||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 46654442 CAGTTAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAG 46654385 Query 126321 -GCGTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||| || ||||| ||||||| Sbjct 46654384 GGCGTGGGTTCAAATCCCACTTCTGACAA 46654356 >seq5715 Length=55982 Score = 84.2 bits (92), Expect = 2e-11 Identities = 71/86 (83%), Gaps = 6/86 (7%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 50241 GTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 50184 Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||| || ||||| |||||| Sbjct 50183 CGTGGGTTCAAATCCCACTTCTGACA 50158 >seq3240 Length=134919 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/88 (82%), Gaps = 6/88 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 118548 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 118491 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||| || ||||| ||||||| Sbjct 118490 GCGTGGGTTCAAATCCCACTTCTGACAA 118463 >seq1237 Length=293156 Score = 84.2 bits (92), Expect = 2e-11 Identities = 71/86 (83%), Gaps = 6/86 (7%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 253694 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 253637 Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||| || ||||| |||||| Sbjct 253636 CGTGGGTTCAAATCCCACTTCTGACA 253611 >seq1984 Length=210466 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || | Sbjct 142571 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGGG 142628 Query 126322 CGTGGGTTCGAACCCCACACCTGACAA 126348 ||||||||| || ||||| ||||||| Sbjct 142629 CGTGGGTTCAAATCCCACTTCTGACAA 142655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556601901492560