Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq6 107 2e-18 seq1 91.5 1e-13 seq11 82.4 6e-11 >seq6 Length=97571839 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| ||||| || || | || || || |||||||| | || || | | Sbjct 19649333 ATGCAAATCTTTGTTAAGACACTCACAGGAAAGACCATTACACTTGAGGTTGAGAGCTGT 19649392 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | | || ||| ||||||| ||||||||||| |||| |||||| Sbjct 19649393 GACACCATTGACAATGTTAAAACAAAAATTCAAGACAAAGAAGGAATTCCTCCAGATCAA 19649452 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 |||||| | |||| ||| || |||||| | |||||| | ||| || | |||||||| Sbjct 19649453 CAAAGGTTAATTTTTGCTGGAAAACAACTTGAAGATGGTCGAACACTGACTGATTATAAC 19649512 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || ||||| || || ||| | ||||||||||| || || || Sbjct 19649513 ATTCAGAAGGAATCCACTCTCCATCTTGTGTTGCGTCTTCGTGGAGG 19649559 Score = 102 bits (112), Expect = 7e-17 Identities = 114/151 (75%), Gaps = 1/151 (1%) Strand=Plus/Plus Query 111263 TAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATG 111322 ||||||||| | || ||||| ||||| |||| || ||||||||| | |||| || Sbjct 19666849 TAAAACAAAGA-TTCAAGACAAGGAAGGAATTCCTCCAGACCAACAAAGGTTGATTTTTG 19666907 Query 111323 CGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTA 111382 | || |||||| |||||||| | ||| | || ||||| ||||| ||||| ||||| | Sbjct 19666908 CTGGAAAACAACTGGAAGATGGTCGAACACTTGCTGATTACAATATTCAAAAGGAATCCA 19666967 Query 111383 CACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 |||| ||| | ||||||||||| |||| || Sbjct 19666968 CACTCCATCTTGTGTTGCGTCTTTGCGGAGG 19666998 >seq1 Length=110538649 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 ||||||||| ||||| || || |||| || ||||| || || ||||| || | Sbjct 86551311 AATGCAAATATTTGTTAAGACATTGACTGGAAAAACAATCACATTGGAAGTTGAGAGCTC 86551252 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 || || ||| | || || |||||| || || ||||| |||| || || Sbjct 86551251 GGACACTATTGATAACGTTAAGGCGAAAATTCAAGATAAGGAAGGTATTCCACCGGACCA 86551192 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 ||||||||| |||| ||| || || |||||||||||| ||| |||| |||||||| Sbjct 86551191 ACAAAGGCTGATTTTTGCTGGGAAGCAATTGGAAGATGGGCGCACTCTGGCAGATTATAA 86551132 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||| ||||| || || || || || |||| | || || || ||||| Sbjct 86551131 TATTCAAAAGGAGTCAACGCTCCACCTAGTCCTTCGCCTTCGTGGTGG 86551084 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 111271 AAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAA 111330 |||||| ||||| |||||| |||| ||||| || ||||| |||| ||| || ||| Sbjct 85490184 AAAATTCAAGACAAGGAAGGCATTCCACCGGATCAGCAGAGGCTGATTTTTGCTGGGAAA 85490243 Query 111331 CAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACAT 111390 ||||||||||| | ||| | || || ||||| || ||||| || || ||||| || Sbjct 85490244 CAATTGGAAGACGGGAGGACTCTTGCTGACTATAACATTCAAAAGGAGTCAACACTCCAC 85490303 Query 111391 TTAGTGTTGCGTCTGCGCGGTGG 111413 |||| | || || || ||||| Sbjct 85490304 CTAGTCCTTCGCCTTCGTGGTGG 85490326 >seq11 Length=61252062 Score = 82.4 bits (90), Expect = 6e-11 Identities = 89/117 (76%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 111275 TTGCC--GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACA 111332 ||||| ||||||||||| | || ||||| || ||| | |||| ||| || ||||| Sbjct 13809771 TTGCCAGGACAAAGAAGGGATACCTCCTGATCAGCAGAGGTTGATTTTTGCTGGAAAACA 13809830 Query 111333 ATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACA 111389 ||||||||| | |||| |||| ||||| ||||| || |||||||| ||||| || Sbjct 13809831 GTTGGAAGATGGTCGAACTCTGGCTGATTACAATATCCAGAAAGAATCAACACTTCA 13809887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422848235174800