Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq1898 125 5e-24 seq1 116 3e-21 seq6 100 2e-16 seq8 87.8 1e-12 seq1629 82.4 5e-11 >seq1898 Length=217218 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| ||||||| ||||||||||| || || ||| | ||| || | || Sbjct 78415 ATGCAGATTTTTGTTAAAACTTTAACGGGCAAGACGATCACCCTTGAAGTTGAGAGCTCA 78474 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || || | | || | ||| ||| || || || |||||| | ||| | |||| Sbjct 78475 GATACCGTCGACAATGTAAAGGCAAAGATCCAGGACAAGGAGGGTATTCCTCCAGACCAG 78534 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | || |||||||| |||||||| || ||| || || | || ||||||||| Sbjct 78535 CAGAGGTTGATATTTGCTGGGAAACAACTCGAGGATGGAAGGACCCTTGCAGATTACAAT 78594 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||||||||| || |||||| |||| | ||| | | ||||| Sbjct 78595 ATTCAGAAGGAATCAACCCTTCATTTGGTGCTTCGTCTGAGGGGAGG 78641 >seq1 Length=110538649 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||||||||||| ||||| || ||||||||||| | ||| || | | Sbjct 85489643 AATGCAAATCTTTATTAAAACCTTAACCGGGAAAACCATTACATTAGAAGTTGAGAGCTC 85489702 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || ||||| ||||| ||||| || ||| | || | |||| Sbjct 85489703 GGACACAATTGATAATGTTAAGGCGAAAATCCAAGATAAGGAAGGTATCCCGTCAGACCA 85489762 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| || || |||||||| || ||| |||||||| | |||| |||| ||||| || Sbjct 85489763 GCAGAGGCTGATTTTTGCTGGGAAGCAATTAGAAGATGGACGAACTCTGGCTGATTATAA 85489822 Query 22013 TATTCAGAAGGAATCTACTCTTCA 22036 || ||||||||||| || ||||| Sbjct 85489823 CATCCAGAAGGAATCCACCCTTCA 85489846 Score = 109 bits (120), Expect = 4e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| || ||||||| ||||| || || ||||| || ||||| || | | Sbjct 85490327 AATGCAAATCTTCGTTAAAACTTTAACAGGAAAGACCATCACACTGGAAGTTGAGAGCTC 85490386 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| ||| | | | || | ||| || || ||||| |||||| | || |||| Sbjct 85490387 AGACACGATTGACAATGTGAAGGCGAAGATACAGGATAAGGAGGGTATTCCACCGGACCA 85490446 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 |||||| |||||||||||||| || || | || ||| | || |||| |||||||| Sbjct 85490447 ACAGAGGCTTATCTTTGCTGGGAAGCAGTTGGAGGATGGTAGGACATTGGCTGATTACAA 85490506 Query 22013 TATTCAGAAGGAATCTACTCTTCAT 22037 ||| |||||||| |||||||| ||| Sbjct 85490507 TATCCAGAAGGAGTCTACTCTCCAT 85490531 Score = 107 bits (118), Expect = 1e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| |||| || ||||| || ||||| || || ||||| || | | Sbjct 86551083 AATGCAAATTTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAAGTTGAGAGCTC 86551024 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || ||| | | | || ||||| |||||| || || |||||| | || | || Sbjct 86551023 GGACACGATAGACAATGTTAAGGCTAAAATTCAAGACAAGGAGGGTATCCCACCGGATCA 86550964 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| || || |||||||| || ||| |||||||| | |||| |||| ||||| || Sbjct 86550963 GCAGAGGCTGATTTTTGCTGGGAAGCAATTAGAAGATGGACGAACTCTGGCTGATTATAA 86550904 Query 22013 TATTCAGAAGGAATCTACTCTTCA 22036 || ||||||||||| || ||||| Sbjct 86550903 CATCCAGAAGGAATCCACCCTTCA 86550880 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| ||||||| |||||||| |||||||| || | ||| || | | Sbjct 86550629 AATGCAAATCTTTGTTAAAACCTTAACGGGAAAAACCATCACATTAGAAGTTGAGAGCTC 86550570 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| ||| | | | || | ||| || || ||||| || ||| | || |||| Sbjct 86550569 AGACACGATTGACAATGTGAAGGCGAAGATACGGGATAAGGAAGGTATTCCGCCCGACCA 86550510 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| || ||||||||||| ||||| | || ||| | || |||| || ||||| Sbjct 86550509 GCAGAGGCTCATCTTTGCTGGAAAACAGTTGGAGGATGGTAGGACACTGGCAGACTACAA 86550450 Query 22013 TATTCAGAAGGAATCTACTCTTCAT 22037 ||| |||||||| ||||| || ||| Sbjct 86550449 TATCCAGAAGGAGTCTACGCTCCAT 86550425 Score = 95.1 bits (104), Expect = 9e-15 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | ||||| || || || ||||| ||||| | ||| || | | Sbjct 14110192 ATGCAAATCTTTGTGAAAACCTTGACTGGGAAAACTATTACTCTTGAAGTTGAGAGCTCG 14110251 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAAC 21950 || || | | | || | ||| ||||||| ||||| || || | ||||| || Sbjct 14110252 GACACCATCGACAATGTGAAGGCAAAAATTCAAGATAAGGAAGGGATTCCACCTG---AC 14110308 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || ||||| ||||| |||||||| || || || || ||| || ||| | || |||||| Sbjct 14110309 CAGCAGAGGCTTATTTTTGCTGGGAAGCAGCTTGAGGATGGAAGGACTTTAGCTGATTAC 14110368 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGT 22042 || || ||||||||||| || || ||| |||| Sbjct 14110369 AACATCCAGAAGGAATCAACCCTCCATTTGGT 14110400 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||||||| |||| ||||| || || ||||| || || ||||| || | | Sbjct 86551311 AATGCAAATATTTGTTAAGACATTGACTGGAAAAACAATCACATTGGAAGTTGAGAGCTC 86551252 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | ||||| |||||| ||||| || ||| | || |||| Sbjct 86551251 GGACACTATTGATAACGTTAAGGCGAAAATTCAAGATAAGGAAGGTATTCCACCGGACCA 86551192 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| || || || |||||||| || ||| | |||||| ||| |||| ||||| || Sbjct 86551191 ACAAAGGCTGATTTTTGCTGGGAAGCAATTGGAAGATGGGCGCACTCTGGCAGATTATAA 86551132 Query 22013 TATTCAGAAGGAATCTACTCTTCA 22036 |||||| ||||| || || || || Sbjct 86551131 TATTCAAAAGGAGTCAACGCTCCA 86551108 >seq6 Length=97571839 Score = 100 bits (110), Expect = 2e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGA-AGCCGC 21892 |||||||| ||| |||| ||| | || || || |||||||| | || || ||| | Sbjct 19649333 ATGCAAATCTTTGTTAAGACACTCACAGGAAAGACCATTACACTTGAGGTTGAGAGCTGT 19649392 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | || |||| ||||||| || ||||| || | ||| | | || Sbjct 19649393 -GACACCATTGACAATGTTAAAACAAAAATTCAAGACAAAGAAGGAATTCCTCCAGATCA 19649451 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| || | || |||||||| |||||||| |||||| ||| || | ||||| || Sbjct 19649452 ACAAAGGTTAATTTTTGCTGGAAAACAACTTGAAGATGGTCGAACACTGACTGATTATAA 19649511 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATAT 22064 |||||||||||||| ||||| ||| | || || ||| | || ||||| ||| Sbjct 19649512 CATTCAGAAGGAATCCACTCTCCATCTTGTGTTGCGTCTTCGTGGAGGTTAT 19649563 >seq8 Length=47755514 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || | || || || ||||| |||||||| ||| |||| ||| | Sbjct 5426836 ATGCAGATTTTCGTGAAGACTTTGACGGGGAAAACCATCACCTTGGAGGTGGAGAGTTCT 5426777 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | | || | ||| || ||| || || |||||| | || | || Sbjct 5426776 GATACGATCGACAATGTGAAGGCTAAGATTCAGGACAAGGAGGGTATCCCGCCGGATCAG 5426717 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || || |||||||| || ||| | |||||| || ||| |||| ||||| ||| Sbjct 5426716 CAGAGGCTGATTTTTGCTGGGAAGCAATTGGAAGATGGAAGGACTCTGGCTGATTATAAT 5426657 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 ||||||||||| || ||||| || Sbjct 5426656 ATTCAGAAGGAGTCAACTCTGCA 5426634 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || || || || ||||| || ||| | ||| ||| | | Sbjct 5427292 ATGCAGATTTTTGTGAAGACGTTGACCGGGAAAACAATCACCCTTGAAGTCGAAAGCTCC 5427233 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | | ||| || ||| || || ||||| | || | | || Sbjct 5427232 GACACAATTGACAACGTCAAGGCTAAGATTCAGGACAAGGAGGGAATCCCACCAGATCAG 5427173 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | ||||||||||| ||||| | |||||| || ||| | || ||||||||| Sbjct 5427172 CAGAGGTTGATCTTTGCTGGTAAACAGTTGGAAGATGGAAGGACTTTAGCTGATTACAAT 5427113 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||||||||| || || |||||| |||| | ||| | || || ||| Sbjct 5427112 ATTCAGAAGGAGTCCACCCTTCATTTGGTGCTCCGTCTTCGTGGTGGA 5427065 >seq1629 Length=244661 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| ||||||| | || || || || ||||| | || || | || Sbjct 134145 ATGCAAATCTTTGTTAAAACTCTGACCGGAAAGACTATTACTCTTGAGGTCGAGAGCTCA 134204 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| ||| || ||||| |||||| | ||| | ||| Sbjct 134205 GACACCATTGACAATGTCAAGGCAAAGATCCAGGATAAGGAGGGTATTCCTCCTGATCAA 134264 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || | || ||||||||||| ||||| |||||| | |||| | || || ||||| Sbjct 134265 CAAAGGTTGATTTTTGCTGGCAAGCAACTTGAAGATGGTAGAACTCTTGCTGACTACAAC 134324 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 || |||||||| || || ||||| Sbjct 134325 ATCCAGAAGGAGTCCACCCTTCA 134347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357962461356676