Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq2 118 9e-22 seq6 113 4e-20 seq1 100 2e-16 seq854 98.7 8e-16 seq1898 95.1 1e-14 seq8 95.1 1e-14 seq1629 91.5 1e-13 seq12 84.2 2e-11 seq1591 82.4 6e-11 >seq2 Length=96359640 Score = 118 bits (130), Expect = 9e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC-GC 114213 ||| ||||| || | | || ||||| | || || || || || ||||||||||| || Sbjct 95422861 ACCACCACGGAGACGGAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGC 95422802 Query 114214 TCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAG 114273 | | || || ||||||||| ||||| || ||| | ||||| | ||| |||||||| | Sbjct 95422801 T-AGGGTTCGGCCATCTTCAAGCTGTTTTCCGGCGAAAATGAGCCTCTGCTGGTCCGGTG 95422743 Query 114274 GAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGA 114333 | |||||||| ||||| |||||| || | | || | ||||||| |||||||| Sbjct 95422742 GGATGCCTTCCTTGTCCTGGATCTTTGCCTTCACGTTGTCGATTGTGTCGGAGGATTCGA 95422683 Query 114334 CGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || | ||| | || || || ||||| ||||| || || |||||||| Sbjct 95422682 CCTCAAGGGTGATGGTCTTACCCGTCAGGGTTTTCACGAAGATCTGCAT 95422634 >seq6 Length=97571839 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | ||| || | ||| | || ||||| || |||||||| ||||| | Sbjct 19649560 ACCTCCACGAAGACGCAACACAAGATGGAGAGTGGATTCCTTCTGAATGTTATAATCAGT 19649501 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || || ||| ||||||||||||||| ||||| | || | | ||||| || ||||| Sbjct 19649500 CAGTGTTCGACCATCTTCAAGTTGTTTTCCAGCAAAAATTAACCTTTGTTGATCTGGAGG 19649441 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTCGA 114333 ||| ||||||||||| ||| |||||||||| | | |||| |||||| | || | Sbjct 19649440 AATTCCTTCTTTGTCTTGAAT-TTTTGTTTTAACATTGTCAATGGTGTCACAGCTCTCAA 19649382 Query 114334 CGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || | || | || || || || || || || ||||| || ||||| Sbjct 19649381 CCTCAAGTGTAATGGTCTTTCCTGTGAGTGTCTTAACAAAGATTTGCAT 19649333 >seq1 Length=110538649 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || |||| || | ||| | || ||||| || ||||| ||||| || Sbjct 14110193 ATACCACCCCTCAGCCTCAGCACCAGATGGAGAGTGGATTCCTTCTGAATATTGTAGTCA 14110134 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| ||| |||||||| || |||||| |||| | | ||| || || ||| Sbjct 14110133 GCAAGGGTACGACCATCCTCAAGTTGCTTTCCAGCGAAGATCAACCTCTGCTGATCTGGA 14110074 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||||||||| || || || ||| | | |||| || |||| || Sbjct 14110073 GGAATGCCTTCTTTATCCTGGATTTTAGCTTTGACATTGTCAATTGTATCGGAACTCTCA 14110014 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || || || |||| |||||||||||| |||||||| Sbjct 14110013 ACCTCAAGGGTAATAGTCTTTCCTGTCAAAGTTTTTACAAAGATCTGCAT 14109964 Score = 100 bits (110), Expect = 2e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 114150 CAAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAA 114209 |||| || ||||| || | | ||| | || | || |||||||| |||||||| ||| Sbjct 14110880 CAAAAGCCACCACGGAGACGAAGAACCAGGTGAAGAGTTGATTCTTTCTGAATGTTATAA 14110821 Query 114210 TCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCC 114269 || | |||||| ||| || || || |||||||| | || || | ||| ||||| Sbjct 14110820 TCAGCAAGGGTACGACCATCCTCCAGCTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCT 14110761 Query 114270 GGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGAT 114329 || ||||| || || || || ||||||| || | | |||| ||| || | | Sbjct 14110760 GGTGGAATACCCTCCTTATCCTGAATCTTTGCCTTCACATTGTCAATGGTATCCGAGCTC 14110701 Query 114330 TCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || |||| ||| | ||| || || |||| ||| || |||||||||||||| Sbjct 14110700 TCAACCTCCAGGGTGATCGTCTTCCCAGTCAAAGTCTTAACAAAAATCTGCAT 14110648 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| | | | ||| | || | || || || ||||| |||||||| || Sbjct 14109965 ATACCACCACGCAAACGGAGAACAAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCA 14109906 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| ||| |||||||| || ||||| |||| | | || || |||||| Sbjct 14109905 GCAAGGGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAACCTTTGCTGATCCGGA 14109846 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| ||||||| || | | |||| ||||| | | || Sbjct 14109845 GGAATGCCTTCCTTGTCCTGAATCTTTGCCTTAACATTATCAATTGTGTCTGAGCTCTCA 14109786 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || || || || | |||||||||||| |||||||| Sbjct 14109785 ACCTCGAGAGTGATAGTCTTCCCTGTTAAAGTTTTTACAAAGATCTGCAT 14109736 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | | || | ||| | || || || || || |||||||||||| Sbjct 83615662 ACCACCACGGAGACGGAGCACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGC 83615721 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | ||||| |||||||| || || || ||| | || |||||||| || || || || Sbjct 83615722 TAGGGTACGGCCGTCTTCAAGCTGCTTTCCGGCGAAAATCAGACGCTGCTGATCTGGGGG 83615781 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| ||| | | || | ||||||| ||||| || Sbjct 83615782 AATCCCTTCCTTATCTTGGATCTTGGCTTTCACATTGTCGATTGTGTCGGAAGATTCAAC 83615841 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | ||||| || || || ||||| || || |||||||| Sbjct 83615842 CTCAAGGGTGATTGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 83615889 >seq854 Length=364260 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| ||||| ||||| ||| | ||| || ||| ||||| || || ||| Sbjct 69465 GTGGACTCTTTCTGAATATTGTAGTCGGCAAGAGTGCGCCCATCCTCAAGCTGCTTTCCA 69406 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || | || | | ||| ||||| ||||| |||||||| ||||| ||||| || Sbjct 69405 GCAAAAATCAACCTCTGCTGGTCTGGAGGGATGCCTTCCTTGTCCTGGATCTTCGACTTA 69346 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||||| | || || || | ||| | || || ||||||| ||| Sbjct 69345 ACATTGTCAATGGTGTCGGAGCTCTCAACCTCAAGGGTGATGGTCTTCCCGGTCAATGTT 69286 Query 114366 TTTACAAAAATCTGCAT 114382 ||||||||||||||||| Sbjct 69285 TTTACAAAAATCTGCAT 69269 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| | ||| || ||| ||||| || || ||| Sbjct 69693 GTGGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTGCGCCCATCCTCAAGCTGCTTTCCA 69634 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| || || ||||| |||||||||||||| ||||| || Sbjct 69633 GCAAAGATCAACCTCTGCTGATCTGGAGGGATGCCTTCTTTGTCCTGGATCTTCGCCTTA 69574 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||||| | || || || | ||| | || || || |||| |||| Sbjct 69573 ACATTGTCAATGGTGTCGGAGCTCTCAACCTCAAGGGTGATGGTCTTCCCAGTCAAAGTT 69514 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||||||||||||| Sbjct 69513 TTCACAAAAATCTGCATG 69496 >seq1898 Length=217218 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 || ||||| | || ||||| || ||||| |||||||| | || | ||| || Sbjct 78623 ACCAAATGAAGGGTTGATTCCTTCTGAATATTGTAATCTGCAAGGGTCCTTCCATCCTCG 78564 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 |||||||| ||||| | || | | ||| ||||| |||||||| || || ||||| Sbjct 78563 AGTTGTTTCCCAGCAAATATCAACCTCTGCTGGTCTGGAGGAATACCCTCCTTGTCCTGG 78504 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 |||||| |||| | || ||||| || | | || || || | ||| | ||| ||| Sbjct 78503 ATCTTTGCCTTTACATTGTCGACGGTATCTGAGCTCTCAACTTCAAGGGTGATCGTCTTG 78444 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | |||||| ||||||||||||||| Sbjct 78443 CCCGTTAAAGTTTTAACAAAAATCTGCATG 78414 >seq8 Length=47755514 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC- 114211 || || ||||| || | | || ||||| | || || || || ||||| |||||||| Sbjct 5427063 ATTCCACCACGAAGACGGAGCACCAAATGAAGGGTGGACTCCTTCTGAATATTGTAATCA 5427122 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 ||| | ||| | |||||| | ||||||||||| |||| | | ||| || || || Sbjct 5427123 GCTAA-AGTCCTTCCATCTTCCAACTGTTTACCAGCAAAGATCAACCTCTGCTGATCTGG 5427181 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 || || || || ||||| |||||| || | | |||| ||||||| | ||| Sbjct 5427182 TGGGATTCCCTCCTTGTCCTGAATCTTAGCCTTGACGTTGTCAATTGTGTCGGAGCTTTC 5427241 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||| || | ||| | ||||| ||||||| || || |||||||||||||| Sbjct 5427242 GACTTCAAGGGTGATTGTTTTCCCGGTCAACGTCTTCACAAAAATCTGCAT 5427292 >seq1629 Length=244661 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| |||||||||||||| || || | || |||||||| || || Sbjct 134569 GTTGACTCTTTCTGAATGTTGTAATCTGCCAATGTCCTCCCGTCCTCAAGTTGCTTCCCG 134510 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| |||||||| ||||| ||||| |||||| ||| Sbjct 134509 GCAAAGATCAGTCTCTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGGATCTTTGCTTTA 134450 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||| || | ||| || || | ||| | || |||||||| || || Sbjct 134449 ACATTGTCGATGGTATCTGAACTTTCAACTTCAAGGGTGATTGTCTTGCCGGTAAGCGTC 134390 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 134389 TTGACAAAGATCTGCATG 134372 >seq12 Length=53491057 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATC-GCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 || || || || || |||||||| || ||| | || || ||| ||||| || || || Sbjct 49993699 GTGGACTCCTTCTGGATGTTGTAGTCAGCTAGT-GTTCGGCCATCCTCAAGCTGCTTTCC 49993757 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 ||| | || | |||||||||||||| ||||||||||| || || |||||| || Sbjct 49993758 TGCGAAAATCAACCGCTGTTGGTCCGGTGGAATGCCTTCCTTATCCTGAATCTTAGCCTT 49993817 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | |||| |||||| | || || || || | ||| | || || || ||||| || Sbjct 49993818 AACATTGTCAATGGTGTCCGATGACTCTACCTCTAAGGTAATAGTCTTCCCCGTCAGGGT 49993877 Query 114365 TTTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 49993878 CTTCACGAATATCTGCAT 49993895 >seq1591 Length=249109 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | || | ||||| || || || |||||||||||| Sbjct 28809 ATACCACCACGGAGACGGAGGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCG 28750 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||| ||| || || || || || ||| |||| | | ||| ||||| || Sbjct 28749 GCGAGGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGT 28690 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || || || ||| || || | | || | |||||| | |||| Sbjct 28689 GGAATTCCCTCCTTATCCTGAATTTTGGCCTTGACATTATCGATGGTGTCAGAACTTTCG 28630 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | ||||||||||| || ||||| || || |||||||| Sbjct 28629 ACCTCAAGGGTGATTGTTTTGCCGGTGAGGGTTTTGACGAAGATCTGCAT 28580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419943952288728