Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2 138 2e-27 >seq2 Length=96359640 Score = 138 bits (152), Expect = 2e-27 Identities = 303/446 (68%), Gaps = 15/446 (3%) Strand=Plus/Minus Query 42399 GAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAAT 42458 |||| | |||| ||| || | || ||||| || |||||||| |||||||| || Sbjct 42516295 GAAAGGCATTTCATCACTCACGTCCTTGCCTTTTTTGCCGCCTCCGACGGCATCGTTTTA 42516236 Query 42459 GAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTT--GAGGCGCGCTGCTT-C 42515 || ||||| ||| |||||||||||||| || || | || |||||||| ||||| | Sbjct 42516235 GAAAACCTAGCCGGAAGGTTCATGAAAGAAGTCCA--AGTTGCCGAGGCGCG-TGCTTTC 42516179 Query 42516 TACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGC-TCAA 42574 ||||||||||| || || || || ||| | ||||| ||| |||| || |||| || | Sbjct 42516178 TACGGCTTCCAAATCGCGATTGAAAACATCCACTCCGAGATGTA---CAGTCTGCTTCTA 42516122 Query 42575 CA--CGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATG 42632 | |||||||| ||| | | ||| | | | | ||| || | ||||| || Sbjct 42516121 GAGTCGTACATCAAGGACTCTGACGAAAAAAGCAGATTATTCCGCGCAGTTGAGACTATC 42516062 Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACG 42692 ||||| | ||||||||||| | ||||| || |||||||| || |||| ||| Sbjct 42516061 CCCTGTGTTGAGAAGAAGGCGAAGTGGGCACTACGTTGGATCGACGGTTCCGA---AACA 42516005 Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752 || | ||| | |||| || ||| | || || || || || ||||| || |||| Sbjct 42516004 TTTGCGGAGCGTTTGGTTGCATTTGCTTGTGTGGAAGGTATTTTTTTCTCTGGAAGCTTC 42515945 Query 42753 GCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAA 42812 | || |||||| | || || || || ||||| ||| | || ||||||||||| Sbjct 42515944 TGTGCTATATTCTGGTTAAAAAAGCGGGGGTTAATGCCTGGATTAACTTTCTCGAACGAG 42515885 Query 42813 CTCATCAGCAGGGACGAGGGGCTGCA 42838 | || ||||||||||| |||| Sbjct 42515884 TTAATTTCAAGGGACGAGGGTTTGCA 42515859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943900153097440