Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq7 89.7 5e-13 seq3 89.7 5e-13 >seq7 Length=114765206 Score = 89.7 bits (98), Expect = 5e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 20239 ACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAAC 20298 ||||| ||||||||| | ||| | || | | || ||| ||||||||||| || || Sbjct 108616554 ACCAGAAACATGAGCTATCATGCATGTCAGCAAGGCATAAGATGCAATGTTAAATGGCAC 108616613 Query 20299 TCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTAC 20358 ||||| |||||| || | || | |||||||| ||||||||| | ||| || | ||||| Sbjct 108616614 TCCCAGACCCATATCAGCAGATCGCTGATACATCTGACAGGATAACTCCCCATTGGCTAC 108616673 Query 20359 ATAAAATTG 20367 |||||| || Sbjct 108616674 ATAAAACTG 108616682 >seq3 Length=72893213 Score = 89.7 bits (98), Expect = 5e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 20239 ACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAAC 20298 ||||||||||||||| | ||| | || || | | ||| || |||||||| || || Sbjct 48339616 ACCAGTAACATGAGCTACCATGCATGTCAACAAAGCATATGATGCGATGTTAAATGGCAC 48339557 Query 20299 TCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTAC 20358 |||||||||||| ||| | || | |||||||| |||||||| | ||| || | || || Sbjct 48339556 TCCCAAACCCATATCTGCAGAGCGCTGATACATTTGACAGGATAACTCCCCATTGGCAAC 48339497 Query 20359 ATAAAATTG 20367 |||||| || Sbjct 48339496 ATAAAACTG 48339488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441167594750960