Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1629 109 5e-19 seq1 105 7e-18 seq854 104 2e-17 seq1898 93.3 4e-14 seq6 87.8 2e-12 >seq1629 Length=244661 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | ||||||||| || ||||| | | |||||||| || ||||| ||||| Sbjct 134827 CCTCCCCTCAAACGCAAGACCAAATGGAGAGTCGACTCCTTCTGGATGTTATAGTCCGCA 134768 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | |||||| | |||||||| | | |||| | |||||| ||||| || || Sbjct 134767 AGAGTCCTGCCGTCCTCCAACTGTTTACCAGCAAAGATCAAACGCTGCTGGTCTGGCGGG 134708 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| ||| ||| ||| | ||||| | | ||| || | ||| || Sbjct 134707 ATACCCTCCTTGTCTTGGATCTTTGCTTTGACATTGT-CAATGGTATCAGAACTCTCAAC 134649 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||| | || | || || ||||||| ||| || ||||||||||||||| Sbjct 134648 CTCCAAAGTTATTGTCTTCCCAGTCAAAGTCTTGACAAAAATCTGCATG 134600 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||| | ||| | ||| | || | | ||||||| || ||||||||||| || Sbjct 134600 GCCACCTCTAAGACGAAGAACAAGGTGCAGGGTTGACTCTTTCTGAATGTTGTAATCTGC 134541 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || | | |||||| ||||| || |||| | |||| || | ||| ||||| ||||| Sbjct 134540 CAATGTCCTCCCGTCCTCAAGTTGCTTCCCGGCAAAGATCAGTCTCTGCTGGTCTGGAGG 134481 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||| ||||| ||| ||| ||| | |||| || | ||| || | || | Sbjct 134480 AATACCTTCCTTGTCTTGGATCTTTGCTTTAACATTG-TCGATGGTATCTGAACTTTCAA 134422 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 | || | || | || || || || || || || ||||| ||||||||| Sbjct 134421 CTTCAAGGGTGATTGTCTTGCCGGTAAGCGTCTTGACAAAGATCTGCATG 134372 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||||| || | || | | | ||||||||||| ||||||||||| Sbjct 134143 CCACCACGGAGACGCAGGACAAGGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCAGCA 134084 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || || || || ||||| |||| | |||| || | ||| || || ||||| Sbjct 134083 AGAGTTCGGCCATCTTCAAGCTGTTTTCCGGCAAAGATCAGTCTCTGCTGATCAGGAGGA 134024 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTT--AATTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||| ||||| ||| | || | ||| |||| || | |||||| | ||| | Sbjct 134023 ATACCTTCCTTGTC-TTGAATCTTAGCTTTGACATTG-TCAATGGTGTCAGAACTCTCGA 133966 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || || || || || || ||||| |||||||| Sbjct 133965 CCTCAAGAGTAATAGTCTTTCCGGTAAGTGTCTTAACAAAGATCTGCAT 133917 >seq1 Length=110538649 Score = 105 bits (116), Expect = 7e-18 Identities = 143/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 ||||||||||||||||||| || || | ||| || ||||| |||||||| || | Sbjct 86551343 TTGACTCCTTTTGAATGTTATAATCAGCGAGAGTCCGTCCATCCTCAAGTTGTTTTCCTG 86551402 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 | |||| | ||| ||||| || || || |||||||||||||| |||||| ||| | Sbjct 86551403 CAAAGATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCCTGGATTTTCGCTTTAA 86551462 Query 138539 -ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 |||| || | |||| | ||| || |||| || | || || ||||| ||||| Sbjct 86551463 CATTG-TCGATCATGTCTGAACTCTCAACTTCGAGAGTTATAGTCTTGCCAGTAAGAGTC 86551521 Query 138598 TTTACAAAAATCTGCAT 138614 |||||||| |||||||| Sbjct 86551522 TTTACAAAGATCTGCAT 86551538 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||||||| | ||| | || | | | ||||||||||| ||||||||||| Sbjct 14109962 CCACCACGCAAACGGAGAACAAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCA 14109903 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||||| ||||| || || | | |||| | | || || |||||||| Sbjct 14109902 AGGGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAACCTTTGCTGATCCGGAGGA 14109843 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| | |||| |||| | || | ||||| | ||| || Sbjct 14109842 ATGCCTTCCTTGTC-CTGAATCTTTGCCTTAACATTATCAATTGTGTCTGAGCTCTCAAC 14109784 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | || || || || | |||||||||||| |||||||| Sbjct 14109783 CTCGAGAGTGATAGTCTTCCCTGTTAAAGTTTTTACAAAGATCTGCAT 14109736 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||||||||| ||||| || | ||||||| |||||||| ||||| || | Sbjct 85489611 TTGACTCCTTTTGAATATTGTAATCCGCGAGAGTACGCCCATCCTCGAGCTGTTTTCCTG 85489552 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 | |||| | ||| ||||| || || || |||||||| || || |||||| || | Sbjct 85489551 CAAAGATCAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGGATTTTGGCCTTAA 85489492 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 | || | ||||| | || || || | || | ||||| ||||||| |||| Sbjct 85489491 CATTATCAATCGTGTCCGAGCTTTCGACTTCCAATGTGATTGTTTTTCCAGTCAAGGTTT 85489432 Query 138599 TTACAAAAATCTGCAT 138614 | ||||||| ||||| Sbjct 85489431 TAACAAAAACTTGCAT 85489416 Score = 82.4 bits (90), Expect = 8e-11 Identities = 139/198 (70%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 ||||||||||||||||||| ||||| | ||| | | ||| || | |||||| || | Sbjct 85490295 TTGACTCCTTTTGAATGTTATAGTCAGCAAGAGTCCTCCCGTCTTCCAATTGTTTCCCAG 85490236 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 | | || || | ||| || ||||| || || ||||| ||||| ||| |||| | ||| Sbjct 85490235 CAAAAATCAGCCTCTGCTGATCCGGTGGAATGCCTTCCTTGTC-TTGAATTTTGGCCTTA 85490177 Query 138539 --ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596 |||| || | ||||| | ||| || || | ||| | ||||| ||||| | || Sbjct 85490176 ACATTG-TCTATCGTGTCCGAGCTCTCAACTTCCAACGTGATTGTTTTTCCAGTTAAGGT 85490118 Query 138597 TTTTACAAAAATCTGCAT 138614 || ||||| || ||||| Sbjct 85490117 CTTAACAAAGATTTGCAT 85490100 >seq854 Length=364260 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || | || | | | |||||||| || |||||||||||| Sbjct 69723 CCACCACGCAGACGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCA 69664 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| ||| ||||| || || || || | | |||| | | ||| || || ||||| Sbjct 69663 AGAGTGCGCCCATCCTCAAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGAGGG 69604 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| ||| || || | ||||| | | |||||||| ||| || Sbjct 69603 ATGCCTTCTTTGTCCTGGATCTTCGCCTTAACATTGT-CAATGGTGTCGGAGCTCTCAAC 69545 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||| | || | || || ||||||| |||||| ||||||||||||||| Sbjct 69544 CTCAAGGGTGATGGTCTTCCCAGTCAAAGTTTTCACAAAAATCTGCATG 69496 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||| | || | || | | | ||||| || ||||| ||||||||| Sbjct 69496 GCCACCACGCAGACGGAGGACAAGGTGAAGGGTGGACTCTTTCTGAATATTGTAGTCGGC 69437 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| ||| ||||| || || || || | | | || | | ||| ||||| ||||| Sbjct 69436 AAGAGTGCGCCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTCTGCTGGTCTGGAGG 69377 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| ||| || || | ||||| | | |||||||| ||| | Sbjct 69376 GATGCCTTCCTTGTCCTGGATCTTCGACTTAACATTGT-CAATGGTGTCGGAGCTCTCAA 69318 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || || |||| |||||||||||||||||||| Sbjct 69317 CCTCAAGGGTGATGGTCTTCCCGGTCAATGTTTTTACAAAAATCTGCAT 69269 >seq1898 Length=217218 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || | || ||| | || ||||| | | |||| ||||| ||||| ||||| || Sbjct 78642 GCCTCCCCTCAGACGAAGCACCAAATGAAGGGTTGATTCCTTCTGAATATTGTAATCTGC 78583 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || | |||||||||||||| || | | | || | | ||| ||||| ||||| Sbjct 78582 AAGGGTCCTTCCATCCTCGAGTTGTTTCCCAGCAAATATCAACCTCTGCTGGTCTGGAGG 78523 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || ||||| ||| ||| |||| ||||| | ||||| || | ||| | Sbjct 78522 AATACCCTCCTTGTCCTGGATCTTTGCCTTTACATTGT-CGACGGTATCTGAGCTCTCAA 78464 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 | || | || | ||| || || || | |||||| ||||||||||||||| Sbjct 78463 CTTCAAGGGTGATCGTCTTGCCCGTTAAAGTTTTAACAAAAATCTGCATG 78414 >seq6 Length=97571839 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | |||||| || | ||| | | || ||||| |||||||| || || || Sbjct 19649559 CCTCCACGAAGACGCAACACAAGATGGAGAGTGGATTCCTTCTGAATGTTATAATCAGTC 19649500 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || |||||||| || | | | |||| | ||||| || ||||| Sbjct 19649499 AGTGTTCGACCATCTTCAAGTTGTTTTCCAGCAAAAATTAACCTTTGTTGATCTGGAGGA 19649440 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA--ATTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||||||||| ||| ||||||||||| |||| || | |||||| ||| | Sbjct 19649439 ATTCCTTCTTTGTC-TTGAATTTTTGTTTTAACATTG-TCAATGGTGTCACAGCTCTCAA 19649382 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || || || || || || ||||| || ||||| Sbjct 19649381 CCTCAAGTGTAATGGTCTTTCCTGTGAGTGTCTTAACAAAGATTTGCAT 19649333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496031675203680