Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq854 105 8e-18 seq8 102 9e-17 seq1 102 9e-17 seq1591 98.7 1e-15 seq1898 91.5 2e-13 seq1629 87.8 2e-12 >seq854 Length=364260 Score = 105 bits (116), Expect = 8e-18 Identities = 141/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || || ||||||||||||| ||||||||| | || || |||||||| || || || Sbjct 69460 CTCTTTCTGAATATTGTAGTCGGCAAGAGTGCGCCCATCCTCAAGCTGCTTTCCAGCAAA 69401 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | ||||||||| | || | || ||||||||| ||||||| ||| | | Sbjct 69400 AATCAACCTCTGCTGGTCTGGAGGGATGCCTTCCTTGTCCTGGATCTTCGACTTAACATT 69341 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | ||||| |||| || || || | |||||||| || || |||| ||||| Sbjct 69340 GTCAATGGTGTCGGAGCTC---TCAACCTCAAGGGTGATGGTCTTCCCGGTCAATGTTTT 69284 Query 46579 AACAAAGATTTGCAT 46593 ||||| || ||||| Sbjct 69283 TACAAAAATCTGCAT 69269 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| |||||||| | |||||||| | || || |||||||| || || || Sbjct 69231 TCCTTTTGGATGTTGTAGTCTGCAAGAGTGCGGCCATCCTCTAGCTGCTTTCCAGCAAAG 69172 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| | |||||| |||| || | | ||||||||| ||||| ||||| | Sbjct 69171 ATCAACCTCTGCTGATCGGGAGGAATTCCTTCCTTGTCCTGAATCTTAGCCTTGACATTA 69112 Query 46523 GCCACCGTGTCG---CTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTA 46579 | | |||||| ||| || || || | || |||||||| || || || || || Sbjct 69111 TCAATAGTGTCGGAACTC---TCAACCTCGAGAGTAATGGTTTTTCCGGTGAGTGTCTTT 69055 Query 46580 ACAAAGATTTGCAT 46593 |||||||||||||| Sbjct 69054 ACAAAGATTTGCAT 69041 Score = 91.5 bits (100), Expect = 2e-13 Identities = 138/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||||||||| ||||||||||| | ||||| || | || || |||||||| || || || Sbjct 69916 CTCCTTTTGAATATTGTAGTCAGCAAGAGTCCGTCCATCCTCAAGCTGCTTTCCAGCAAA 69857 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | ||||||||| | || | || ||||| ||| ||||||| ||| | | Sbjct 69856 AATCAACCTCTGCTGGTCCGGAGGGATGCCTTCCTTATCCTGGATCTTCGCCTTAACATT 69797 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | ||||| |||| || || || | |||||||| || || |||| || || Sbjct 69796 GTCAATGGTGTCGGAGCTC---TCAACTTCAAGGGTGATGGTCTTCCCAGTCAAAGTCTT 69740 Query 46579 AACAAAGATTTGCAT 46593 ||| || || ||||| Sbjct 69739 AACGAAAATCTGCAT 69725 >seq8 Length=47755514 Score = 102 bits (112), Expect = 9e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||||| ||| || | |||| ||||||||||| |||||||| Sbjct 5427557 CTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCTGCCGTCTTCGAGCTGCTTTCCGGCGAA 5427616 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | ||||||||| | ||| | | ||||| ||| ||||| ||||| ||| Sbjct 5427617 GATCAACCTCTGCTGGTCCGGCGGGATTCCTTCCTTATCCTGAATCTTAGCCTTGA-CGT 5427675 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| ||| || || | || || || || || || || ||||| | Sbjct 5427676 TGTCAATTGTGTCGGAGCTTTCAACCTCAAGGGTTATCGTCTTTCCAGTTAGGGTTTTGA 5427735 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 5427736 CGAAGATCTGCAT 5427748 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| || | ||| || | |||| ||||||||||| ||||| || Sbjct 5427329 CTCCTTCTGGATGTTGTAATCAGCTAGGGTTCTGCCGTCTTCGAGCTGCTTTCCGGCAAA 5427388 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | ||||||||| | || | | ||||| ||| ||||| ||| | ||| Sbjct 5427389 GATCAACCTCTGCTGGTCCGGTGGGATTCCTTCCTTATCCTGAATCTTAGCCTT-AACGT 5427447 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| ||| || || | ||||| ||||| || || || ||||| | Sbjct 5427448 TGTCAATAGTGTCGGAGCTTTCAACCTCAAGGGTGATTGTTTTCCCAGTTAGGGTTTTGA 5427507 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 5427508 CGAAGATCTGCAT 5427520 >seq1 Length=110538649 Score = 102 bits (112), Expect = 9e-17 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || || || | || ||| ||||| | ||| |||||| |||||||||||||| | Sbjct 86550402 CCACCCCTCAACCTCAGCACAAGATGGAGCGTAGACTCCTTCTGGATATTGTAGTCTGCC 86550461 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || | | || || | ||| || || || || || | | ||||||||||| ||| Sbjct 86550462 AGTGTCCTACCATCCTCCAACTGTTTTCCAGCAAAGATGAGCCTCTGCTGGTCGGGCGGA 86550521 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543 | | ||||| ||| |||||| ||| | | | | |||||| |||| || Sbjct 86550522 ATACCTTCCTTATCCCGTATCTTCGCCTTCACATTGTCAATCGTGTCTGAGCTC---TCA 86550578 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || || | ||||||||||| ||||| | ||||||||||||||||||||| Sbjct 86550579 ACTTCTAATGTGATGGTTTTTCCCGTTAAGGTTTTAACAAAGATTTGCATT 86550629 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||||||||||||||||||||| | ||||| ||| | || || | |||||| || || || Sbjct 14109699 CTCCTTTTGGATATTGTAGTCAGCAAGAGTTCGCCCATCCTCTAACTGCTTTCCAGCAAA 14109640 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | ||||| || | || | | ||||| || |||||| ||| | | Sbjct 14109639 GATCAACCTTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGGATCTTTGCCTTAACATT 14109580 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | ||||| ||| || || || | |||||||||||||| || || || || Sbjct 14109579 GTCAATAGTGTCTGAACTC---TCAACCTCGAGAGTGATGGTTTTGCCAGTGAGGGTCTT 14109523 Query 46579 AACAAAGATTTGCAT 46593 |||||||||||||| Sbjct 14109522 TACAAAGATTTGCAT 14109508 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/196 (70%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||||||||| |||||||| || | ||||| ||| | || |||||||| || || || || Sbjct 85489607 CTCCTTTTGAATATTGTAATCCGCGAGAGTACGCCCATCCTCGAGCTGTTTTCCTGCAAA 85489548 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| || || || || | || | | ||||| || ||| || ||| | | Sbjct 85489547 GATCAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGGATTTTGGCCTTAACATT 85489488 Query 46522 CGCCACCGTGTCGCTCGA---TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | |||||| ||| ||| || |||| ||||| ||||| || |||| ||||| Sbjct 85489487 ATCAATCGTGTC---CGAGCTTTCGACTTCCAATGTGATTGTTTTTCCAGTCAAGGTTTT 85489431 Query 46579 AACAAAGATTTGCATT 46594 |||||| | ||||||| Sbjct 85489430 AACAAAAACTTGCATT 85489415 >seq1591 Length=249109 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| |||| || || || | || |||||||||||||||||||| Sbjct 28771 CTCCTTCTGGATGTTGTAATCGGCGAGGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAA 28712 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | ||||||||| | || | | |||||| ||| || || ||||| | Sbjct 28711 GATCAACCTCTGCTGGTCTGGTGGAATTCCCTCCTTATCCTGAATTTTGGCCTTGACATT 28652 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| ||| || || | ||||| |||||||| || || ||||| || Sbjct 28651 ATCGATGGTGTCAGAACTTTCGACCTCAAGGGTGATTGTTTTGCCGGTGAGGGTTTTGAC 28592 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 28591 GAAGATCTGCAT 28580 Score = 96.9 bits (106), Expect = 4e-15 Identities = 142/198 (72%), Gaps = 10/198 (5%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || |||||||||||||| | | || | | || ||||||||||| || || || Sbjct 29455 CTCTTTCTGGATATTGTAGTCAGCCAAGGTCCTTCCATCCTCGAGCTGCTTCCCAGCAAA 29396 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTT--CTTCTTGAGC 46519 ||||| | ||||||||| | || | | |||||||||| |||||| ||| | | Sbjct 29395 GATCAACCTCTGCTGGTCCGGTGGGATACCCTCCTTGTCCTGGATCTTAGCTTTTACATT 29336 Query 46520 GTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTT 46576 |||| | ||||| |||| ||||| |||| ||||||||||| || |||| || Sbjct 29335 GTCG--ATGGTGTCAGAGCTC---TCCACCTCCAAGGTGATGGTTTTCCCAGTCAATGTC 29281 Query 46577 TTAACAAAGATTTGCATT 46594 || || ||||| |||||| Sbjct 29280 TTCACGAAGATCTGCATT 29263 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||| || | ||| || || | || |||||||||||||| ||||| Sbjct 28998 TCCTTCTGGATGTTGTAATCAGCTAGGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAG 28939 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| | ||||||||| | || | || |||||| ||| || || ||||| | Sbjct 28938 ATCAACCTCTGCTGGTCTGGGGGAATGCCCTCCTTATCCTGAATTTTGGCCTTGACATTG 28879 Query 46523 GCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTA 46579 | | ||||| ||| || || || | |||||||| ||||| || || ||||| Sbjct 28878 TCGATGGTGTCAGAACTC---TCGACCTCAAGGGTGATGGTCTTGCCTGTGAGGGTTTTG 28822 Query 46580 ACAAAGATTTGCAT 46593 || ||||| ||||| Sbjct 28821 ACGAAGATCTGCAT 28808 >seq1898 Length=217218 Score = 91.5 bits (100), Expect = 2e-13 Identities = 160/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| || | ||| | ||||| ||| | || ||||| || |||||||| || | Sbjct 78643 TGCCTCCCCTCAGACGAAGCACCAAATGAAGGGTTGATTCCTTCTGAATATTGTAATCTG 78584 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || || | | || ||||| || || || || |||||||| | ||||||||| | | Sbjct 78583 CAAGGGTCCTTCCATCCTCGAGTTGTTTCCCAGCAAATATCAACCTCTGCTGGTCTGGAG 78524 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATT 46541 | | | |||||||||| |||||| ||| | | | || || || |||| | Sbjct 78523 GAATACCCTCCTTGTCCTGGATCTTTGCCTTTACATTGTCGACGGTATCTGAGCTC---T 78467 Query 46542 CCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || || | ||||| || |||||||| | ||||||||||| || ||||| Sbjct 78466 CAACTTCAAGGGTGATCGTCTTGCCCGTTAAAGTTTTAACAAAAATCTGCAT 78415 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||||||||| || | || |||||| | || || |||||||| || || ||| Sbjct 79061 TCCTTTTGGATATTGTAATCTGCAAGGGTGCGCCCATCCTCCAGCTGCTTACCAGCAAAT 79002 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | | |||||| || | || | | || || ||| || || ||||| ||| Sbjct 79001 ATGAGCCTCTGCTGATCTGGTGGGATCCCTTCTTTATCCTGAATTTTGGCCTTGA-CGTT 78943 Query 46523 G-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | | ||||| |||| ||||| |||| |||||||| || || |||| ||||| Sbjct 78942 GTCAATAGTGTCAGAGCTC---TCCACTTCCAAAGTGATGGTCTTTCCTGTCAAAGTTTT 78886 Query 46579 AACAAAGATTTGCAT 46593 ||||| || ||||| Sbjct 78885 GACAAATATCTGCAT 78871 >seq1629 Length=244661 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| || |||||||| |||| ||| | || |||||| ||||| || ||||| | Sbjct 134827 CCTCCCCTCAAACGCAAGACCAAATGGAGAGTCGACTCCTTCTGGATGTTATAGTCCGCA 134768 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| | |||| || | ||| || || || || ||||| ||||||||||| | ||| Sbjct 134767 AGAGTCCTGCCGTCCTCCAACTGTTTACCAGCAAAGATCAAACGCTGCTGGTCTGGCGGG 134708 Query 46487 ACGCTCTCCTTGTCCATGATCTT 46509 | | ||||||||| |||||| Sbjct 134707 ATACCCTCCTTGTCTTGGATCTT 134685 Score = 82.4 bits (90), Expect = 9e-11 Identities = 136/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| | ||||| | | || || || |||||||| || || Sbjct 134336 CTCCTTCTGGATGTTGTAGTCAGCAAGAGTTCTACCATCTTCAAGTTGCTTGCCAGCAAA 134277 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | || || || | || | | |||||| ||| |||||| ||||| | Sbjct 134276 AATCAACCTTTGTTGATCAGGAGGAATACCCTCCTTATCCTGGATCTTTGCCTTGACATT 134217 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | ||||| |||| || || || | || || || || || ||||| ||||| Sbjct 134216 GTCAATGGTGTCTGAGCTC---TCGACCTCAAGAGTAATAGTCTTTCCGGTCAGAGTTTT 134160 Query 46579 AACAAAGATTTGCAT 46593 ||||||||||||||| Sbjct 134159 AACAAAGATTTGCAT 134145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564975606536880