Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15]
37,194 sequences; 2,365,682,703 total letters
Query= NC_013797.1
Length=108592
Score E
Sequences producing significant alignments: (Bits) Value
seq8 96.9 2e-15
seq1 96.9 2e-15
seq1898 87.8 1e-12
seq1591 82.4 5e-11
seq854 82.4 5e-11
>seq8
Length=47755514
Score = 96.9 bits (106), Expect = 2e-15
Identities = 162/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| || || | ||| || || | |||| ||| || || || ||||||||||| |||
Sbjct 5426610 CCACCACGGAGACGGAGGACAAGGTGCAGAGTTGACTCCTTCTGAATATTATAATCAGCC 5426669
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
| | | | |||| |||||||| ||||| ||||||| | | ||||||||||| ||
Sbjct 5426670 AGAGTCCTTCCATCTTCCAATTGCTTCCCAGCAAAAATCAGCCTCTGCTGATCCGGCGGG 5426729
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTG--TTTA-ATCGTCGCTACTGTGTCTGCGCTTTCC 39669
| || || ||||| | | | || | || | || |||| | || || | || |||
Sbjct 5426730 ATACCCTCCTTGTC-CTGAATCTTAGCCTTCACATTGTCG--ATCGTATCAGAACTCTCC 5426786
Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| ||||| || || ||||| ||||| ||||| || ||||| ||||||||
Sbjct 5426787 ACCTCCAAGGTGATGGTTTTCCCCGTCAAAGTCTTCACGAAAATCTGCAT 5426836
>seq1
Length=110538649
Score = 96.9 bits (106), Expect = 2e-15
Identities = 136/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588
|| ||||| ||||||||||| || | || |||| |||||||| ||||| ||||
Sbjct 85489378 TCCTTTTGAATATTATAATCTGCGAGTGTACGCCCATCTTCCAATTGCTTCCCTGCAAAT 85489319
Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648
|| | | ||||||||||| || | || || ||||| ||||| |||| |
Sbjct 85489318 ATCAGCCTCTGCTGATCCGGTGGAATACCCTCCTTGTCTTGAATTTTCGCCTTAACATTA 85489259
Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708
||| ||||||| | |||| || |||| || || ||||| || ||||| ||||| ||
Sbjct 85489258 TCTATCGTGTCTGAGTTTTCAACTTCCAGTGTGATGGTTTTTCCAGTTAAGGTTTTAACA 85489199
Query 39709 AAGATCTGCAT 39719
|||||||||||
Sbjct 85489198 AAGATCTGCAT 85489188
Score = 96.9 bits (106), Expect = 2e-15
Identities = 136/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588
|| ||||| || ||||| || || | | | | || |||||||||||||| |||||
Sbjct 85490290 TCCTTTTGAATGTTATAGTCAGCAAGAGTCCTCCCGTCTTCCAATTGTTTCCCAGCAAAA 85490231
Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648
|| | | ||||||||||| || | |||||| ||||| ||||| |||| |
Sbjct 85490230 ATCAGCCTCTGCTGATCCGGTGGAATGCCTTCCTTGTCTTGAATTTTGGCCTTAACATTG 85490171
Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708
||| ||||| | ||| || || ||||| || |||||||| || ||||| || || ||
Sbjct 85490170 TCTATCGTGTCCGAGCTCTCAACTTCCAACGTGATTGTTTTTCCAGTTAAGGTCTTAACA 85490111
Query 39709 AAGATCTGCAT 39719
||||| |||||
Sbjct 85490110 AAGATTTGCAT 85490100
Score = 95.1 bits (104), Expect = 8e-15
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587
||| || || || |||||||| |||| | ||| |||| || ||||| ||||| ||||
Sbjct 86550891 TTCCTTCTGGATGTTATAATCAGCCAGAGTTCGTCCATCTTCTAATTGCTTCCCAGCAAA 86550950
Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGT 39647
||| | | ||||||||||| || | || || ||||| ||||| |||| |
Sbjct 86550951 AATCAGCCTCTGCTGATCCGGTGGGATACCCTCCTTGTCTTGAATTTTAGCCTTAACATT 86551010
Query 39648 CGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707
||| ||||| | ||| || || ||||| || |||||||| || ||||| || || ||
Sbjct 86551011 GTCTATCGTGTCCGAGCTCTCAACTTCCAACGTGATTGTTTTTCCAGTTAAGGTCTTAAC 86551070
Query 39708 GAAGATCTGCAT 39719
|| || |||||
Sbjct 86551071 AAAAATTTGCAT 86551082
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| || |||||||| || || | || | ||| || ||||| || || || || ||
Sbjct 14109962 CCACCACGCAAACGGAGAACAAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCA 14109903
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
| || |||| || | ||| || || |||| || || | |||||||||| ||
Sbjct 14109902 AGGGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAACCTTTGCTGATCCGGAGGA 14109843
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672
| |||||| ||||| || ||| |||| | | | |||||||| ||| || ||
Sbjct 14109842 ATGCCTTCCTTGTCCTGAATCTTTGCCTTAACATTATCAATTGTGTCTGAGCTCTCAACC 14109783
Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| | ||| || || || || |||||||||||||| |||||||||||
Sbjct 14109782 TCGAGAGTGATAGTCTTCCCTGTTAAAGTTTTTACAAAGATCTGCAT 14109736
Score = 86.0 bits (94), Expect = 4e-12
Identities = 136/193 (70%), Gaps = 4/193 (2%)
Strand=Plus/Plus
Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588
|| ||||| || |||||||| || | | ||| |||| || | |||||| || ||||
Sbjct 86551348 TCCTTTTGAATGTTATAATCAGCGAGAGTCCGTCCATCCTCAAGTTGTTTTCCTGCAAAG 86551407
Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTA--ATCG 39646
|| ||||| || ||||| | || | ||||||||||| ||||| |||| || |
Sbjct 86551408 ATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCCTGGATTTTCGCTTTAACATTG 86551467
Query 39647 TCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTA 39706
||| | |||||| || || || || | ||| || || || || || | ||| ||||
Sbjct 86551468 TCG--ATCATGTCTGAACTCTCAACTTCGAGAGTTATAGTCTTGCCAGTAAGAGTCTTTA 86551525
Query 39707 CGAAGATCTGCAT 39719
| |||||||||||
Sbjct 86551526 CAAAGATCTGCAT 86551538
Score = 84.2 bits (92), Expect = 2e-11
Identities = 133/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588
|| ||||| ||||||||||| |||| | ||| |||| |||||||| ||||| |||||
Sbjct 86551120 TCCTTTTGAATATTATAATCTGCCAGAGTGCGCCCATCTTCCAATTGCTTCCCAGCAAAA 86551179
Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648
|| | | || || |||| || | ||||| || || ||||| |||| |
Sbjct 86551180 ATCAGCCTTTGTTGGTCCGGTGGAATACCTTCCTTATCTTGAATTTTCGCCTTAACGTTA 86551239
Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708
| | ||||| | ||| || || ||||| || |||||||| || || || || || ||
Sbjct 86551240 TCAATAGTGTCCGAGCTCTCAACTTCCAATGTGATTGTTTTTCCAGTCAATGTCTTAACA 86551299
Query 39709 AAGATCTGCAT 39719
|| || |||||
Sbjct 86551300 AATATTTGCAT 86551310
>seq1898
Length=217218
Score = 87.8 bits (96), Expect = 1e-12
Identities = 160/231 (69%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551
||| || | || ||| || |||||||| | || ||| || || ||||| ||||| ||
Sbjct 78642 GCCTCCCCTCAGACGAAGCACCAAATGAAGGGTTGATTCCTTCTGAATATTGTAATCTGC 78583
Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611
| | | |||| || | ||||||||| |||| || || | |||||| || | ||
Sbjct 78582 AAGGGTCCTTCCATCCTCGAGTTGTTTCCCAGCAAATATCAACCTCTGCTGGTCTGGAGG 78523
Query 39612 TACGCCTTCTTTGTCGCATATTTTTTG-TTTA-ATCGTCGCTACTGTGTCTGCGCTTTCC 39669
| || || ||||| || ||| |||| || |||| || || |||| ||| ||
Sbjct 78522 AATACCCTCCTTGTCCTGGATCTTTGCCTTTACATTGTCG--ACGGTATCTGAGCTCTCA 78465
Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720
|| || | || || || || |||||||||||||| || || |||||||||
Sbjct 78464 ACTTCAAGGGTGATCGTCTTGCCCGTTAAAGTTTTAACAAAAATCTGCATG 78414
>seq1591
Length=249109
Score = 82.4 bits (90), Expect = 5e-11
Identities = 135/193 (70%), Gaps = 4/193 (2%)
Strand=Plus/Minus
Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588
||||| || ||||| || || ||||| | | |||| || | || ||||| ||||
Sbjct 29454 TCTTTCTGGATATTGTAGTCAGCCAAGGTCCTTCCATCCTCGAGCTGCTTCCCAGCAAAG 29395
Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCG 39646
|| || | |||||| |||| || | || || ||||| | || || | || || |
Sbjct 29394 ATCAACCTCTGCTGGTCCGGTGGGATACCCTCCTTGTCCTGGATCTTAGCTTTTACATTG 29335
Query 39647 TCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTA 39706
||| | ||||| | ||| ||||| ||||| || || ||||| || || || || || |
Sbjct 29334 TCGATG--GTGTCAGAGCTCTCCACCTCCAAGGTGATGGTTTTCCCAGTCAATGTCTTCA 29277
Query 39707 CGAAGATCTGCAT 39719
|||||||||||||
Sbjct 29276 CGAAGATCTGCAT 29264
>seq854
Length=364260
Score = 82.4 bits (90), Expect = 5e-11
Identities = 158/232 (68%), Gaps = 1/232 (0%)
Strand=Plus/Minus
Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547
|||| || || | |||||| || |||||||||| ||| ||||| || ||||||||||
Sbjct 70183 CATC-CCTCCCCTCAAACGTAGCACCAAATGCAGTGTGGACTCTTTCTGGATATTATAAT 70125
Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607
| || | | | |||| || | || || || |||| || || ||||||||||| |
Sbjct 70124 CAGCAAGAGTCCTCCCATCCTCAAGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCTG 70065
Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTT 39667
|| | |||||||| || || || || | | | | ||| || | ||||
Sbjct 70064 GCGGAATCCCTTCTTTATCTTGGATCTTCGCCTTTACATTATCAATTGTATCAGAACTTT 70005
Query 39668 CCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
| || ||||| || ||||| || || || | || || || |||||||||||
Sbjct 70004 CAACCTCCAAGGTGATTGTCTTCCCTGTCAGTGTCTTCACAAAGATCTGCAT 69953
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 347212136709002
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