Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq8 96.9 2e-15 seq1 96.9 2e-15 seq1898 87.8 1e-12 seq1591 82.4 5e-11 seq854 82.4 5e-11 >seq8 Length=47755514 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || || | |||| ||| || || || ||||||||||| ||| Sbjct 5426610 CCACCACGGAGACGGAGGACAAGGTGCAGAGTTGACTCCTTCTGAATATTATAATCAGCC 5426669 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | | |||| |||||||| ||||| ||||||| | | ||||||||||| || Sbjct 5426670 AGAGTCCTTCCATCTTCCAATTGCTTCCCAGCAAAAATCAGCCTCTGCTGATCCGGCGGG 5426729 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTG--TTTA-ATCGTCGCTACTGTGTCTGCGCTTTCC 39669 | || || ||||| | | | || | || | || |||| | || || | || ||| Sbjct 5426730 ATACCCTCCTTGTC-CTGAATCTTAGCCTTCACATTGTCG--ATCGTATCAGAACTCTCC 5426786 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || ||||| || || ||||| ||||| ||||| || ||||| |||||||| Sbjct 5426787 ACCTCCAAGGTGATGGTTTTCCCCGTCAAAGTCTTCACGAAAATCTGCAT 5426836 >seq1 Length=110538649 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || ||||| ||||||||||| || | || |||| |||||||| ||||| |||| Sbjct 85489378 TCCTTTTGAATATTATAATCTGCGAGTGTACGCCCATCTTCCAATTGCTTCCCTGCAAAT 85489319 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | | ||||||||||| || | || || ||||| ||||| |||| | Sbjct 85489318 ATCAGCCTCTGCTGATCCGGTGGAATACCCTCCTTGTCTTGAATTTTCGCCTTAACATTA 85489259 Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708 ||| ||||||| | |||| || |||| || || ||||| || ||||| ||||| || Sbjct 85489258 TCTATCGTGTCTGAGTTTTCAACTTCCAGTGTGATGGTTTTTCCAGTTAAGGTTTTAACA 85489199 Query 39709 AAGATCTGCAT 39719 ||||||||||| Sbjct 85489198 AAGATCTGCAT 85489188 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || ||||| || ||||| || || | | | | || |||||||||||||| ||||| Sbjct 85490290 TCCTTTTGAATGTTATAGTCAGCAAGAGTCCTCCCGTCTTCCAATTGTTTCCCAGCAAAA 85490231 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | | ||||||||||| || | |||||| ||||| ||||| |||| | Sbjct 85490230 ATCAGCCTCTGCTGATCCGGTGGAATGCCTTCCTTGTCTTGAATTTTGGCCTTAACATTG 85490171 Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708 ||| ||||| | ||| || || ||||| || |||||||| || ||||| || || || Sbjct 85490170 TCTATCGTGTCCGAGCTCTCAACTTCCAACGTGATTGTTTTTCCAGTTAAGGTCTTAACA 85490111 Query 39709 AAGATCTGCAT 39719 ||||| ||||| Sbjct 85490110 AAGATTTGCAT 85490100 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 ||| || || || |||||||| |||| | ||| |||| || ||||| ||||| |||| Sbjct 86550891 TTCCTTCTGGATGTTATAATCAGCCAGAGTTCGTCCATCTTCTAATTGCTTCCCAGCAAA 86550950 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGT 39647 ||| | | ||||||||||| || | || || ||||| ||||| |||| | Sbjct 86550951 AATCAGCCTCTGCTGATCCGGTGGGATACCCTCCTTGTCTTGAATTTTAGCCTTAACATT 86551010 Query 39648 CGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 ||| ||||| | ||| || || ||||| || |||||||| || ||||| || || || Sbjct 86551011 GTCTATCGTGTCCGAGCTCTCAACTTCCAACGTGATTGTTTTTCCAGTTAAGGTCTTAAC 86551070 Query 39708 GAAGATCTGCAT 39719 || || ||||| Sbjct 86551071 AAAAATTTGCAT 86551082 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || |||||||| || || | || | ||| || ||||| || || || || || Sbjct 14109962 CCACCACGCAAACGGAGAACAAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCA 14109903 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | || |||| || | ||| || || |||| || || | |||||||||| || Sbjct 14109902 AGGGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAACCTTTGCTGATCCGGAGGA 14109843 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||| ||||| || ||| |||| | | | |||||||| ||| || || Sbjct 14109842 ATGCCTTCCTTGTCCTGAATCTTTGCCTTAACATTATCAATTGTGTCTGAGCTCTCAACC 14109783 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | ||| || || || || |||||||||||||| ||||||||||| Sbjct 14109782 TCGAGAGTGATAGTCTTCCCTGTTAAAGTTTTTACAAAGATCTGCAT 14109736 Score = 86.0 bits (94), Expect = 4e-12 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || ||||| || |||||||| || | | ||| |||| || | |||||| || |||| Sbjct 86551348 TCCTTTTGAATGTTATAATCAGCGAGAGTCCGTCCATCCTCAAGTTGTTTTCCTGCAAAG 86551407 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTA--ATCG 39646 || ||||| || ||||| | || | ||||||||||| ||||| |||| || | Sbjct 86551408 ATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCCTGGATTTTCGCTTTAACATTG 86551467 Query 39647 TCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTA 39706 ||| | |||||| || || || || | ||| || || || || || | ||| |||| Sbjct 86551468 TCG--ATCATGTCTGAACTCTCAACTTCGAGAGTTATAGTCTTGCCAGTAAGAGTCTTTA 86551525 Query 39707 CGAAGATCTGCAT 39719 | ||||||||||| Sbjct 86551526 CAAAGATCTGCAT 86551538 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || ||||| ||||||||||| |||| | ||| |||| |||||||| ||||| ||||| Sbjct 86551120 TCCTTTTGAATATTATAATCTGCCAGAGTGCGCCCATCTTCCAATTGCTTCCCAGCAAAA 86551179 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | | || || |||| || | ||||| || || ||||| |||| | Sbjct 86551180 ATCAGCCTTTGTTGGTCCGGTGGAATACCTTCCTTATCTTGAATTTTCGCCTTAACGTTA 86551239 Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708 | | ||||| | ||| || || ||||| || |||||||| || || || || || || Sbjct 86551240 TCAATAGTGTCCGAGCTCTCAACTTCCAATGTGATTGTTTTTCCAGTCAATGTCTTAACA 86551299 Query 39709 AAGATCTGCAT 39719 || || ||||| Sbjct 86551300 AATATTTGCAT 86551310 >seq1898 Length=217218 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || | || ||| || |||||||| | || ||| || || ||||| ||||| || Sbjct 78642 GCCTCCCCTCAGACGAAGCACCAAATGAAGGGTTGATTCCTTCTGAATATTGTAATCTGC 78583 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 | | | |||| || | ||||||||| |||| || || | |||||| || | || Sbjct 78582 AAGGGTCCTTCCATCCTCGAGTTGTTTCCCAGCAAATATCAACCTCTGCTGGTCTGGAGG 78523 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTG-TTTA-ATCGTCGCTACTGTGTCTGCGCTTTCC 39669 | || || ||||| || ||| |||| || |||| || || |||| ||| || Sbjct 78522 AATACCCTCCTTGTCCTGGATCTTTGCCTTTACATTGTCG--ACGGTATCTGAGCTCTCA 78465 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || || | || || || || |||||||||||||| || || ||||||||| Sbjct 78464 ACTTCAAGGGTGATCGTCTTGCCCGTTAAAGTTTTAACAAAAATCTGCATG 78414 >seq1591 Length=249109 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 ||||| || ||||| || || ||||| | | |||| || | || ||||| |||| Sbjct 29454 TCTTTCTGGATATTGTAGTCAGCCAAGGTCCTTCCATCCTCGAGCTGCTTCCCAGCAAAG 29395 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCG 39646 || || | |||||| |||| || | || || ||||| | || || | || || | Sbjct 29394 ATCAACCTCTGCTGGTCCGGTGGGATACCCTCCTTGTCCTGGATCTTAGCTTTTACATTG 29335 Query 39647 TCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTA 39706 ||| | ||||| | ||| ||||| ||||| || || ||||| || || || || || | Sbjct 29334 TCGATG--GTGTCAGAGCTCTCCACCTCCAAGGTGATGGTTTTCCCAGTCAATGTCTTCA 29277 Query 39707 CGAAGATCTGCAT 39719 ||||||||||||| Sbjct 29276 CGAAGATCTGCAT 29264 >seq854 Length=364260 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/232 (68%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || || | |||||| || |||||||||| ||| ||||| || |||||||||| Sbjct 70183 CATC-CCTCCCCTCAAACGTAGCACCAAATGCAGTGTGGACTCTTTCTGGATATTATAAT 70125 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | || | | | |||| || | || || || |||| || || ||||||||||| | Sbjct 70124 CAGCAAGAGTCCTCCCATCCTCAAGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCTG 70065 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTT 39667 || | |||||||| || || || || | | | | ||| || | |||| Sbjct 70064 GCGGAATCCCTTCTTTATCTTGGATCTTCGCCTTTACATTATCAATTGTATCAGAACTTT 70005 Query 39668 CCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || ||||| || ||||| || || || | || || || ||||||||||| Sbjct 70004 CAACCTCCAAGGTGATTGTCTTCCCTGTCAGTGTCTTCACAAAGATCTGCAT 69953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347212136709002