Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq5025 129 7e-25 seq1090 127 3e-24 seq11 120 4e-22 >seq5025 Length=72118 Score = 129 bits (142), Expect = 7e-25 Identities = 308/454 (68%), Gaps = 14/454 (3%) Strand=Plus/Minus Query 15887 ATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGC 15946 |||||| || ||||| | || | || ||||| ||||| | ||||| ||||| || Sbjct 14678 ATCAAATCGCCCTGGTCTCAGCAAAGCAGAGTCAAGAATATCTGCACGATTGGTTGCCGC 14619 Query 15947 GATGACAACAATACCTGT--TTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTA 16004 | || | ||||| || ||| || | ||||| ||||| |||||||| || ||||| Sbjct 14618 AACAACTATTATACCAGTATTTCCTT--CGAAACCGTCCATTTCTGTCAATAGTTGGTTC 14561 Query 16005 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 16062 | || ||||||| |||||||||| || | | | | |||| | | |||| || | Sbjct 14560 AGGGTCTGTTCCCTTTCATCATTCCCT--CCTCCAATTCCAGTCCCTCTTTGCCGCCCAA 14503 Query 16063 CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGA-CTTCAAAG 16121 | |||||||| ||||| | || || ||||| || |||||| || ||| ||| Sbjct 14502 CAGCATCAATTTCATCGACAAATACAATGCAGGGAGCATTTTCCTTGGCCTTCTTGAAA- 14444 Query 16122 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 16181 ||||| || || || ||| || ||||||||||||||||| ||||| | || | ||| Sbjct 14443 AGATCACGGACTCGAGAGGCTCCTACACCAACAAACATCTCAACAAATTCTGAACCTGAA 14384 Query 16182 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 16240 |||| || || || ||| | |||||| ||||| || || || || ||||| || Sbjct 14383 -ATTGAGAAAAATGGAACACCCGCTTCACCGGCAATTGCCTTTGCTAGCAGGGTCTTCCC 14325 Query 16241 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAAT-CTTGGCGCCACTTCCAAAGT 16299 ||||| || ||| | || || ||||| ||||| | | | ||||| | | Sbjct 14324 AGTACCGGGAGGACCAACAAGAAGAACACCTTTCGGAATACGAGCCCCCACTGCGGTA-A 14266 Query 16300 ATCTCTCAGGTTGCTTAAGAAAATCCACAATCTC 16333 | ||||| || | ||| | ||| || |||| ||| Sbjct 14265 ACCTCTCGGGCTTCTTCAAAAATTCTACAACCTC 14232 >seq1090 Length=315597 Score = 127 bits (140), Expect = 3e-24 Identities = 201/282 (71%), Gaps = 12/282 (4%) Strand=Plus/Plus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| |||||||| || ||||||||||| ||||||||||| || | ||||||||| | Sbjct 296002 AAACCCATCCATTTCAGTCAAAAGCTGATTAATAGTTTGCTCTCTCTCATCATTCCC--A 296059 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | ||| || |||| | ||| ||||||| ||||||||||||||||| || || ||| Sbjct 296060 CCTCCCATTCCTGCACCTCTCTGCCTTCCCACAGCATCAATCTCATCAATAAACACAATG 296119 Query 16092 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 16147 || || ||| | || || || || | ||||| ||| || | || || || Sbjct 296120 CAAGG--CGCTTTAGACTTCGCCTTCTCGAACAAATCCC--TCACTCTAGAAGCTCCAAC 296175 Query 16148 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 16207 ||||||||||| ||| ||||| | || || | |||| || || || ||| || ||| Sbjct 296176 ACCAACAAACAACTCAACAAACTCTGATGCTGCACATGAGAAAAATGGTACACCAGCTTC 296235 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 ||| || | |||| || | ||| ||||| || ||||| || Sbjct 296236 ACCAGCTACTGCTCTAGCCAAAAGTGTCTTTCCTGTACCAGG 296277 >seq11 Length=61252062 Score = 120 bits (132), Expect = 4e-22 Identities = 198/283 (70%), Gaps = 16/283 (6%) Strand=Plus/Plus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 || |||||||| |||||||| ||||| |||||||| || |||| |||||||| | Sbjct 31421632 AACCCATCCATTTCTGTCAACAGCTGATTAATAGTCTGCTCCCTCTCATCATTTCC---- 31421687 Query 16035 ATACCACCA-GCACTGCG-----TTGCTTTCCCACGGCATCAATCTCATCAATGAAGACG 16088 ||| ||| || |||| |||| |||| || ||||||||||||||||| || || Sbjct 31421688 --ACCTCCAAGCCCTGCCCCTCTTTGCCTTCCAACAGCATCAATCTCATCAATAAACACA 31421745 Query 16089 ATGCATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCA 16146 || || || ||||| || || ||||| | ||||| ||| | || |||| Sbjct 31421746 ATACAAGG--CGCTTTCGACTTCGCCTTCTCAAACAAATCCCTTACTCTAGAAGCTCCCA 31421803 Query 16147 CACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATT 16206 |||| ||||||| ||| ||||| | || || | |||| || || || ||| | | Sbjct 31421804 CACCCACAAACAACTCAACAAACTCTGATGCTGCACATGAGAAAAACGGCACACCTGCCT 31421863 Query 16207 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 |||| |||| |||| || | ||| |||||||| ||||| || Sbjct 31421864 CACCAGCAACTGCTCTAGCCAAAAGGGTCTTACCAGTACCAGG 31421906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620453801339680