Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq11 84.2 3e-11 >seq11 Length=61252062 Score = 84.2 bits (92), Expect = 3e-11 Identities = 192/281 (68%), Gaps = 6/281 (2%) Strand=Plus/Plus Query 11592 GAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGG-AGG 11650 ||| || ||||||||||| | ||||| || || ||||| || | |||||| || | Sbjct 31421631 GAACCCATCCATTTCTGTCAACAGCTGATTAATAGTCTGCTCCCTCTCATCATTTCCACC 31421690 Query 11651 GCATACCACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATAC 11710 | | | |||||| | | | | || ||||| ||||||||||| || || || |||| Sbjct 31421691 TCCAAGC-CCTGCCCCTCTTTGCCTTCCAACAGCATCAATCTCATCAATAAACACAATAC 31421749 Query 11711 ACGGTTGGTTGGCACGT-GCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCT 11769 | || | || || | |||| || || | || | ||| | ||||| ||||| Sbjct 31421750 AAGG-CGCTTTCGACTTCGCCTTCTCAAACAAATCCCTTACTCTAGAAGCTCCCACACCC 31421808 Query 11770 ACGAACATCTCAACGAAGTTTGCGGCAGAACACTGA-ATGAAGGGAACATTAGACTCACC 11828 || |||| |||||| || | || || | ||| ||| | || || ||| | |||||| Sbjct 31421809 ACAAACAACTCAACAAACTCTGATGCTGCACA-TGAGAAAAACGGCACACCTGCCTCACC 31421867 Query 11829 AGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTG 11869 ||| | |||| ||| | || |||||||| |||||||||| Sbjct 31421868 AGCAACTGCTCTAGCCAAAAGGGTCTTACCAGTACCAGGTG 31421908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588702170333200