Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq5025 127 2e-24 seq1090 122 1e-22 seq11 116 4e-21 seq2 91.5 2e-13 seq101 89.7 6e-13 seq460 86.0 7e-12 >seq5025 Length=72118 Score = 127 bits (140), Expect = 2e-24 Identities = 253/368 (69%), Gaps = 10/368 (3%) Strand=Plus/Minus Query 9194 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9253 |||||| || ||||| | || | || ||||| ||||| | ||||| || || || Sbjct 14678 ATCAAATCGCCCTGGTCTCAGCAAAGCAGAGTCAAGAATATCTGCACGATTGGTTGCCGC 14619 Query 9254 GATGACAACAATACCTGT--TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 | || | ||||| || ||| || | ||||| ||||| |||||||| |||||||| Sbjct 14618 AACAACTATTATACCAGTATTTCCTT--CGAAACCGTCCATTTCTGTCAATAGTTGGTTC 14561 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 9369 | || ||||||| |||||||||| || | | | | |||| | | |||| || | Sbjct 14560 AGGGTCTGTTCCCTTTCATCATTCCCT--CCTCCAATTCCAGTCCCTCTTTGCCGCCCAA 14503 Query 9370 CGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGA 9429 | |||||||| ||||| | || ||||| || || |||||| ||| | | || | Sbjct 14502 CAGCATCAATTTCATCGACAAATACAATGCAGGGAGCATTTTCCTTGGCCTTCTTGAAAA 14443 Query 9430 GATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 9489 |||| || || | ||| || ||||||||||||||||| ||||| | || | ||| Sbjct 14442 GATCACGGACTCGAGAGGCTCCTACACCAACAAACATCTCAACAAATTCTGAACCTGAA- 14384 Query 9490 ATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9548 |||| || || || ||| | |||||| ||||| || || || || ||||| || Sbjct 14383 ATTGAGAAAAATGGAACACCCGCTTCACCGGCAATTGCCTTTGCTAGCAGGGTCTTCCCA 14324 Query 9549 GTACCTGG 9556 ||||| || Sbjct 14323 GTACCGGG 14316 >seq1090 Length=315597 Score = 122 bits (134), Expect = 1e-22 Identities = 197/279 (71%), Gaps = 6/279 (2%) Strand=Plus/Plus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| |||||||| || |||||||| || ||||||||||| || | ||||||||| | Sbjct 296002 AAACCCATCCATTTCAGTCAAAAGCTGATTAATAGTTTGCTCTCTCTCATCATTCCC--A 296059 Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | | ||| || |||| | ||| ||||||| ||||||||||||||||| || ||||| Sbjct 296060 CCTCCCATTCCTGCACCTCTCTGCCTTCCCACAGCATCAATCTCATCAATAAACACAATG 296119 Query 9399 CATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACC 9457 || || | ||| | || | || || | ||| | || || || || ||||| Sbjct 296120 CAAGG-CGCTTTAGACTTCGCCTTCTCGAACAAATCCCTCACTCTAGAAGCTCCAACACC 296178 Query 9458 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9517 |||||||| ||| ||||| | || || | |||| || || || ||| || |||||| Sbjct 296179 AACAAACAACTCAACAAACTCTGATGCTGCACATGAGAAAAATGGTACACCAGCTTCACC 296238 Query 9518 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 || | |||| || | ||| ||||| || ||||| || Sbjct 296239 AGCTACTGCTCTAGCCAAAAGTGTCTTTCCTGTACCAGG 296277 >seq11 Length=61252062 Score = 116 bits (128), Expect = 4e-21 Identities = 197/282 (70%), Gaps = 14/282 (5%) Strand=Plus/Plus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 || |||||||| |||||||| || || |||||||| || |||| |||||||| | Sbjct 31421632 AACCCATCCATTTCTGTCAACAGCTGATTAATAGTCTGCTCCCTCTCATCATTTCC---- 31421687 Query 9342 ATACCACCA-GCACTGCG-----TTGCTTTCCCACGGCATCAATCTCATCAATGAAGACA 9395 ||| ||| || |||| |||| |||| || ||||||||||||||||| || ||| Sbjct 31421688 --ACCTCCAAGCCCTGCCCCTCTTTGCCTTCCAACAGCATCAATCTCATCAATAAACACA 31421745 Query 9396 ATACATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCAC 9454 ||||| || | ||| | || | ||||| | ||| | || || || ||||| Sbjct 31421746 ATACAAGG-CGCTTTCGACTTCGCCTTCTCAAACAAATCCCTTACTCTAGAAGCTCCCAC 31421804 Query 9455 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9514 ||| ||||||| ||| ||||| | || || | |||| || || || ||| | || Sbjct 31421805 ACCCACAAACAACTCAACAAACTCTGATGCTGCACATGAGAAAAACGGCACACCTGCCTC 31421864 Query 9515 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 ||| |||| |||| || | ||| |||||||| ||||| || Sbjct 31421865 ACCAGCAACTGCTCTAGCCAAAAGGGTCTTACCAGTACCAGG 31421906 >seq2 Length=96359640 Score = 91.5 bits (100), Expect = 2e-13 Identities = 182/265 (69%), Gaps = 11/265 (4%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| | |||||| || | ||||| | || || ||||| || || ||||| | || Sbjct 42515858 GTGCAAACCCTCGTCCCTTGAAATTAACTCGTTCGAGAAAGTTAATCCAGGCATTAACCC 42515917 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||| || ||||| | ||||| ||||| || ||||| || ||||| |||||||| Sbjct 42515918 CCGCTTTTTTAACCAGAATATAGCACAGAAGCTTCCAGAGAAAAAAATACCTTCCACACA 42515977 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAG-CGAGACTTTGTGTCAAACCATTTCATTG 117463 ||||| |||| | ||||| || || | || || ||| | ||| | || Sbjct 42515978 AGCAAATGCAACCAAACGCTCCGCAAATGTTTCGGAACC----GTCGATCCAACGTAGTG 42516033 Query 117464 CCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAA-CTGCTTC 117522 |||| |||||||||||||||| ||| || | ||| | | || ||||| |||||| Sbjct 42516034 CCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCGCGGAATAATCTGCTTT 42516093 Query 117523 TTT--TCAGATCCATCCTTAATGTA 117545 ||| ||||| ||||| ||||| Sbjct 42516094 TTTCGTCAGA---GTCCTTGATGTA 42516115 >seq101 Length=1011416 Score = 89.7 bits (98), Expect = 6e-13 Identities = 195/289 (67%), Gaps = 16/289 (6%) Strand=Plus/Plus Query 9195 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9254 ||||| | || || | ||| | || | |||||| || ||| | ||| || || || Sbjct 764963 TCAAATCTTCCAGGTCTAAGCAAAGCTTGATCAAGAATTTCAGGCCTATTAGTAGCAGCA 765022 Query 9255 ATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAA 9312 ||||||| | || |||||| | |||||||||||| || || | ||||||||||| Sbjct 765023 ATGACAATGACTCCAGTGTTTCC--AGTAAAACCATCCATTTCAGTGAGAAGTTGGTTAA 765080 Query 9313 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACC---AGCACTGCGT---TGCTTTC 9366 || || || | ||||||||| | |||||| | || | | | ||| | | Sbjct 765081 GTGTCTGCTCTCTTTCATCATTTCC------ACCACCAATATCAGTTCCTCTCTGCCTCC 765134 Query 9367 CCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAA 9426 | || ||||||||||||||||| || || | ||| ||| ||||| || | | | Sbjct 765135 CAACAGCATCAATCTCATCAATAAACACTAAACAAGGTGAATTTTGCTTTGCCTTGTTGA 765194 Query 9427 AGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAA 9475 | | || | ||| || || |||||||||||||||||||| || || Sbjct 765195 ATAAGTCCCTAACTCTAGAAGCTCCCACACCAACAAACATCTCAACGAA 765243 >seq460 Length=501829 Score = 86.0 bits (94), Expect = 7e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 106448 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTG 106507 ||||| |||||| || |||||||| | ||| || ||||| || ||| | |||| Sbjct 290801 ACATATCGTGGAAGAGCAATTGATGCAAGATTACACACAGCAGTTTCAGTAGGACTTGTG 290742 Query 106508 TACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 106567 ||||| | |||||| ||||||||||| ||| ||| || || || | ||||| ||||| Sbjct 290741 TACTCAATAATTTCAGTACACAAGTTAGAAGACTTGATAGTGCCAAGATTCTGCTGGTTG 290682 Query 106568 CTCTTTTTGTTGCACGCATCCT 106589 || ||| | || || | ||||| Sbjct 290681 CTTTTTCTATTACAAGAATCCT 290660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589706503176560