Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1591 127 1e-24 seq854 111 1e-19 seq1629 107 1e-18 seq1 100 2e-16 seq1898 98.7 6e-16 seq6 98.7 6e-16 seq11 91.5 1e-13 seq2 89.7 3e-13 seq12110 87.8 1e-12 >seq1591 Length=249109 Score = 127 bits (140), Expect = 1e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||||||||||| ||||| |||||||| | ||| || || |||||||| ||||| | Sbjct 29264 TTCCTCCCCTCAGCCTCAGCACCAAGTGCAAGGTGGACTCCTTTTGAATGTTGTAGTCTG 29205 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 |||| | || |||| |||| ||| ||||| ||||| || || | ||||||||| | | Sbjct 29204 CAAGGGTGCGACCATCTTCCAACTGCTTTCCTGCAAAGATCAGCCTCTGCTGGTCTGGGG 29145 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | |||||||||||| ||||| |||||| | || | ||| |||| Sbjct 29144 GAATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATAGTGTCAGAACTTTCAA 29085 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || | ||| ||||| || || ||||| || || || |||||||||||| Sbjct 29084 CCTCCAGGGTGATGGTCTTGCCGGTGAGGGTTTTGACGAAGATCTGCATA 29035 >seq854 Length=364260 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||||| ||| ||||||||| |||||||| || | |||| | || |||| |||||||| Sbjct 70384 GTGAAGGGTGGATTCTTTCTGGATGTTATAATCTGCAAGGGTACGACCATCCTCCAGCTG 70325 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 || || ||||| || || | |||||| ||| | || | ||||||||||| |||||| Sbjct 70324 CTTACCAGCAAAAATCAGCCTTTGCTGATCTGGTGGAATACCCTCCTTGTCCTGAATCTT 70265 Query 34898 CTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGT 34957 | ||| ||| | || | ||| | ||| || || | || ||||| || || || Sbjct 70264 CGCTTTCACGTTATCAATAGTATCAGAGCTCTCCACCTCCAAAGTGATGGTCTTCCCAGT 70205 Query 34958 GAGAGTCTTCACAAAGATCTGCAT 34981 |||||||| ||||| || ||||| Sbjct 70204 TAGAGTCTTGACAAATATTTGCAT 70181 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||||||||| | | ||||| || | |||| |||||||| || ||||| || | | Sbjct 70179 CCTCCCCTCAAACGTAGCACCAAATGCAGTGTGGACTCTTTCTGGATATTATAATCAGCA 70120 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | | |||| || ||||| || || ||||| || | ||| ||||| ||| |||| Sbjct 70119 AGAGTCCTCCCATCCTCAAGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCTGGCGGA 70060 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTC 34930 | ||| || || || |||||| || || || |||| || ||| || Sbjct 70059 ATCCCTTCTTTATCTTGGATCTTCGCCTTTAC--AT--TATCAATTGTATCAGAACTTTC 70004 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||| || | ||| || || || || || || ||||||||||||||||||||| Sbjct 70003 AACCTCCAAGGTGATTGTCTTCCCTGTCAGTGTCTTCACAAAGATCTGCATA 69952 >seq1629 Length=244661 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||||||||| | ||| ||||| || | || || ||||| ||||||||||||| | Sbjct 134827 CCTCCCCTCAAACGCAAGACCAAATGGAGAGTCGACTCCTTCTGGATGTTATAGTCCGCA 134768 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | | | || |||| |||||| || ||||| || | || ||||||||| |||| Sbjct 134767 AGAGTCCTGCCGTCCTCCAACTGTTTACCAGCAAAGATCAAACGCTGCTGGTCTGGCGGG 134708 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||||||||| ||||| |||||| | || | ||| |||||| Sbjct 134707 ATACCCTCCTTGTCTTGGATCTTTGCTTTGACATTGTCAATGGTATCAGAACTCTCAACC 134648 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||||| || || || || | |||||| ||||| |||||||| Sbjct 134647 TCCAAAGTTATTGTCTTCCCAGTCAAAGTCTTGACAAAAATCTGCAT 134601 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || || ||||| ||||| | ||| |||| |||| || ||||||||||||||||| Sbjct 134107 TCCTTTTGGATGTTGTAGTCAGCAAGAGTTCGGCCATCTTCAAGCTGTTTTCCGGCAAAG 134048 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || |||| ||||| || | || | || |||||||| |||||| |||||| Sbjct 134047 ATCAGTCTCTGCTGATCAGGAGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTG 133988 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| ||| || || | || || || ||||| || || ||||| ||| Sbjct 133987 TCAATGGTGTCAGAACTCTCGACCTCAAGAGTAATAGTCTTTCCGGTAAGTGTCTTAACA 133928 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 133927 AAGATCTGCAT 133917 >seq1 Length=110538649 Score = 100 bits (110), Expect = 2e-16 Identities = 154/214 (72%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||| ||||| || |||||||||||||||||| || | |||| | || |||| || Sbjct 14110857 AACCAGGTGAAGAGTTGATTCTTTCTGAATGTTATAATCAGCAAGGGTACGACCATCCTC 14110798 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||| || || ||||| || || | ||||||||| | || | |||||||| || Sbjct 14110797 CAGCTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCTGGTGGAATACCCTCCTTATCCTG 14110738 Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT--TCACCG-GC-CTCAACATCGACGGTTATGG 34947 |||||| || || || | || || | ||| || |||||| || | ||| || | Sbjct 14110737 AATCTTTGCCTTCAC--AT--TGTCAATGGTATCCGAGCTCTCAACCTCCAGGGTGATCG 14110682 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || || | |||||| ||||| |||||||| Sbjct 14110681 TCTTCCCAGTCAAAGTCTTAACAAAAATCTGCAT 14110648 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||||||||| | ||| | ||||| ||| ||| ||||| |||||||| || | Sbjct 86550856 CCACCCCTCAACCTGAGAACAAGGTGAAGGGTGGATTCCTTCTGGATGTTATAATCAGCC 86550915 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || ||||| |||| || | || || || ||||| || || | ||||| || | || Sbjct 86550916 AGAGTTCGTCCATCTTCTAATTGCTTCCCAGCAAAAATCAGCCTCTGCTGATCCGGTGGG 86550975 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||||||||| ||| || || || |||||| || | |||||| Sbjct 86550976 ATACCCTCCTTGTCTTGAATTTTAGCCTTAACATTGTCTATCGTGTCCGAGCTCTCAACT 86551035 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | || || |||||||| || | ||||| ||||| || ||||| Sbjct 86551036 TCCAACGTGATTGTTTTTCCAGTTAAGGTCTTAACAAAAATTTGCAT 86551082 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34754 TCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGA 34813 ||| ||||||||||||| || | || | || || ||||| || || ||||| | Sbjct 86550401 TCCACCCCTCAACCTCAGCACAAGATGGAGCGTAGACTCCTTCTGGATATTGTAGTCTGC 86550460 Query 34814 AAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGG 34873 || | | |||| |||| ||||||||| ||||| || || | |||||||| |||| Sbjct 86550461 CAGTGTCCTACCATCCTCCAACTGTTTTCCAGCAAAGATGAGCCTCTGCTGGTCGGGCGG 86550520 Query 34874 CACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAAC 34933 | || ||||| || | |||||| || || | |||| || | |||||| Sbjct 86550521 AATACCTTCCTTATCCCGTATCTTCGCCTTCACATTGTCAATCGTGTCTGAGCTCTCAAC 86550580 Query 34934 ATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | || |||||||||||||| | || || |||||||| ||||| Sbjct 86550581 TTCTAATGTGATGGTTTTTCCCGTTAAGGTTTTAACAAAGATTTGCAT 86550628 Score = 84.2 bits (92), Expect = 1e-11 Identities = 161/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| ||||| | | ||||| || | |||| |||||||| |||||||| || | | Sbjct 14110646 CCTCCTCTCAATCGGAGCACCAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCAGCA 14110587 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | | | || || ||||| || || ||||| || | | |||||||| | || Sbjct 14110586 AGAGTCCTCCCGTCCTCAAGCTGCTTCCCTGCAAAAATCAACCTCTGCTGGTCAGGTGGG 14110527 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG-GC-CTC 34930 | || |||||||| ||| || || || || | ||||| | ||| || ||| Sbjct 14110526 ATTCCTTCCTTGTCTTGAATTTTAGCCTTCAC--AT--TGTCGATGGTGTCCGAGCTCTC 14110471 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||| || | ||| || ||||| || || | ||||||||||||||||||||| Sbjct 14110470 AACTTCAAGGGTGATAGTTTTCCCTGTCAATGTCTTCACAAAGATCTGCATA 14110419 >seq1898 Length=217218 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||||||||| | ||| |||| |||| ||| || ||||| |||||||| || | | Sbjct 78869 CCTCCCCTCAAACGCAACACCAGATGAAGTGTCGACTCCTTCTGTATGTTATAATCAGCA 78810 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | | | |||| || || || || || |||||||| | || ||||||||| | || Sbjct 78809 AGTGTCCTTCCATCTTCAAGTTGCTTCCCTGCAAATATCAACCGCTGCTGGTCTGGGGGA 78750 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||| |||||||| ||| || || ||| | || | || |||||| Sbjct 78749 ATCCCTTCCTTGTCTTGAATTTTGGCCTTCACGTTATCAATTGTGTCTGAACTCTCAACC 78690 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| || |||||||| || | |||||| || ||||| ||||| Sbjct 78689 TCCAAGGTGATAGTTTTTCCTGTCAAAGTCTTGACGAAGATTTGCAT 78643 >seq6 Length=97571839 Score = 98.7 bits (108), Expect = 6e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| |||||||||||||| || | || |||| |||| || || |||||||| ||||| Sbjct 19649524 TTCCTTCTGAATGTTATAATCAGTCAGTGTTCGACCATCTTCAAGTTGTTTTCCAGCAAA 19649465 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 |||| | ||| || ||| | || | || || ||||| ||| || ||||| | Sbjct 19649464 AATTAACCTTTGTTGATCTGGAGGAATTCCTTCTTTGTCTTGAAT-TTTTGTTTTAACAT 19649406 Query 34910 TG-CTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || | || | |||| | |||||| || | || ||||| ||||| ||||| ||||| | Sbjct 19649405 TGTCAATGGTGTCACAGCTCTCAACCTCAAGTGTAATGGTCTTTCCTGTGAGTGTCTTAA 19649346 Query 34969 CAAAGATCTGCAT 34981 ||||||| ||||| Sbjct 19649345 CAAAGATTTGCAT 19649333 >seq11 Length=61252062 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 34747 AATCAT--TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTT 34804 |||||| |||||||||| | ||||||||||| ||||| ||| ||||||||| || || Sbjct 13809921 AATCATAGTTCCTCCCCTGAGCCTCAAAACCAGGTGAAGTGTTGATTCTTTCTGGATATT 13809862 Query 34805 ATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTG 34864 || || | || |||| |||| |||| ||||||||| ||||| || | | ||||| Sbjct 13809861 GTAATCAGCCAGAGTTCGACCATCTTCCAACTGTTTTCCAGCAAAAATCAACCTCTGCTG 13809802 Query 34865 GTCTTGCGGCACCCCCTCCTTGTC 34888 || | || | ||| || ||||| Sbjct 13809801 ATCAGGAGGTATCCCTTCTTTGTC 13809778 >seq2 Length=96359640 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||| || | ||| || ||||| ||||| || || | ||| |||| |||| || Sbjct 95422842 ACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGCTAGGGTTCGGCCATCTTCA 95422783 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||||||||| || || || | |||||||| | || | || |||||||| Sbjct 95422782 AGCTGTTTTCCGGCGAAAATGAGCCTCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGG 95422723 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || ||| | || | || || || || || | ||| ||||| || Sbjct 95422722 ATCTTTGCCTTCACGTTGTCGATTGTGTCGGAGGATTCGACCTCAAGGGTGATGGTCTTA 95422663 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATATTCG 34986 ||||| || || ||||| ||||||||||| |||| Sbjct 95422662 CCCGTCAGGGTTTTCACGAAGATCTGCATCTTCG 95422629 >seq12110 Length=10092 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/122 (76%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 34748 ATCAT--TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTA 34805 ||||| |||||||||| | ||||||||| | ||||| || ||||||||||||||| Sbjct 4413 ATCATAGTTCCTCCCCTGAGCCTCAAAACAAGGTGAAGAGTTGATTCTTTCTGAATGTTG 4472 Query 34806 TAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGG 34865 || || | ||| | || |||| |||| |||||| || ||||| || |||| ||||| Sbjct 4473 TAATCAGCCAGGGTCCGCCCATCTTCCAACTGTTTCCCAGCAAAAATCAGTCTCTGCTGA 4532 Query 34866 TC 34867 || Sbjct 4533 TC 4534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324486442980432