Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2 156 5e-33 seq155 109 6e-19 >seq2 Length=96359640 Score = 156 bits (172), Expect = 5e-33 Identities = 560/871 (64%), Gaps = 5/871 (1%) Strand=Plus/Plus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 || ||||| || ||||||| || |||||||||||||| || || | ||| || Sbjct 42515553 TTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAGC 42515612 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 ||||| ||||||| ||||| | |||| || | || | | || || | | Sbjct 42515613 TCCATCCAATCAAACGGATTCTGAGCATTGTACAACTTATCATAACCCAAAGCATCCAAC 42515672 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 | |||||| || ||||||| ||| ||| || |||||| ||| | ||||||||| | | Sbjct 42515673 AATCTATCAGCCACAAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAGC 42515732 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATA 18909 | ||| || || || | ||| || |||||| | || || |||| | ||| Sbjct 42515733 GCACAAGGCAGCGCGTCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAATT 42515792 Query 18910 GATACAACTCTATCTTCATTAGGAGG-GTATAGAAGATGTTTAAACATCAAACATGCAAA 18968 ||||| || ||| || | || || | | || | |||||| || || Sbjct 42515793 CCCTTAACTCGTTCCTCAGTAAGCTTCGTCCTTAACAAACTATAA-AGCAAACAAGCGAA 42515851 Query 18969 ATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCAT 19028 |||||| || | |||||||| || || || || || || || ||||| |||||||| Sbjct 42515852 ATCACAGTGCAAACCCTCGTCCCTTGAAATTAACTCGTTCGAGAAAGTTAATCCAGGCAT 42515911 Query 19029 CAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTC 19088 | || | ||||||||||||||||||| | || |||||| || || |||||||| Sbjct 42515912 TAACCCCCGCTTTTTTAACCAGAATATAGCACAGAAGCTTCCAGAGAAAAAAATACCTTC 42515971 Query 19089 TACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTT 19148 || ||||| ||||| | | |||| || | | || | | ||||| Sbjct 42515972 CACACAAGCAAATGCAACCAAAC--GCTCCGCAAAT-GTTTCGGAACCGTCGATCCAACG 42516028 Query 19149 CAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATA 19208 |||||||| | |||||||| | ||||| || || ||||| | | |||| Sbjct 42516029 TAGTGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCGCGGAATAATCT 42516088 Query 19209 CATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATG 19268 | || || | || || | || | |||| | | ||||||||| || || || Sbjct 42516089 GCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACTGTACATCTCGGAGTG 42516148 Query 19269 AATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328 || ||||| || || || || || ||||| ||| | || || | | || ||||| Sbjct 42516149 GATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGCGCCTCGGCAACTTGGACTTC 42516208 Query 19329 ACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGC 19388 | || ||| || | | ||||| ||| || || || || |||||||| || Sbjct 42516209 TTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCGGAGGCGGCAAAAAAGGC 42516268 Query 19389 TAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATC 19448 | || || | || ||||| ||||| | | ||||| || | ||| | | |||| Sbjct 42516269 AAGGACGTGAGTGATGAAATGCCTTTCACCGGGGGTTAGGGTTTCCCAGTGACGGTTATC 42516328 Query 19449 TTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTT 19508 ||||||||| ||||||||| | ||||| ||||| ||| |||||||| ||||| | Sbjct 42516329 GGAAGATAAATCGACTTCTTCAGCAGTCCAGAAAGAGGCCAAGGCTTTTTTGTACATTTC 42516388 Query 19509 CCATATATCACGATATTGTATAGGAAATATA 19539 ||| || | | ||||| || || || ||| Sbjct 42516389 CCAAATTTGTGGGTATTGAATTGGGAACATA 42516419 >seq155 Length=843148 Score = 109 bits (120), Expect = 6e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 |||||| | ||||||||||||||||||||||||| | |||||| | || | ||| | Sbjct 128082 AGTTCCAGCATTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTGAGACATCAAATG 128141 Query 48659 ATATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTA 48717 |||||||| || |||| || ||||| | ||| || ||||| | |||||| | ||||| Sbjct 128142 ATATGTTTTGATGGCAGATTCAATATCATCCTTG-TGAATACCAACAGATACTCTCATTA 128200 Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777 ||| | ||| || ||||| |||| ||| | || || || || || || | || | Sbjct 128201 GCATGTGTTGTGGCCTTTCTACAACTTTACCCTGAATCTTTAAGAGGTAAGACCTCTCAA 128260 Query 48778 ATGTTTTAAAACCAAAATA 48796 ||||| |||||||| || Sbjct 128261 GGGTTTTGAAACCAAAGTA 128279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561847461566160