Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq2 111 2e-19 >seq2 Length=96359640 Score = 111 bits (122), Expect = 2e-19 Identities = 363/561 (65%), Gaps = 11/561 (2%) Strand=Plus/Plus Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232 ||||| || |||||||| || ||||| || || || || || || || || || ||| Sbjct 42515841 AAACAAGCGAAATCACAGTGCAAACCCTCGTCCCTTGAAATTAACTCGTTCGAGAAAGTT 42515900 Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGAT-CCAGAAAA 37291 ||||| |||||||| || | ||||| | ||| ||||| || || ||| | ||||| || Sbjct 42515901 AATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAGCA-CAGAAGCTTCCAGAGAA 42515959 Query 37292 GAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTT---GAACTATA 37348 ||||||||||| || |||||||| || | ||| | || ||| |||| Sbjct 42515960 AAAAATACCTTCCACACAAGCAAATGCAACCAAACGCTCCGCAAATGTTTCGGAAC---- 42516015 Query 37349 ATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAAT 37408 | ||||| | || ||| | ||||| | |||||| || || |||| Sbjct 42516016 --CGTCGATCCAACGTAGTGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAAC 42516073 Query 37409 TGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACT 37468 ||| || | | ||||||| ||| || | || || | || | || | ||| Sbjct 42516074 TGCGCGGAATAATCTGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACT 42516133 Query 37469 ATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTC 37528 ||||| || ||||| || |||||||| || || || || || || ||| | || || Sbjct 42516134 GTACATCTCGGAGTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGCGCCTC 42516193 Query 37529 AGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACT 37588 | | ||| || || || | ||||| |||| |||||| ||| || || || Sbjct 42516194 GGCAACTTGGACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCGGA 42516253 Query 37589 AGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTT 37648 || ||||| || ||||| || | | || ||||| |||||| | | || ||| Sbjct 42516254 GGCGGCAAAAAAGGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGGGTTAGGGTTTC 42516313 Query 37649 CCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGC 37708 ||| | | |||| |||||||| ||||| ||| | ||||| ||| ||||| || Sbjct 42516314 CCAGTGACGGTTATCGGAAGATAAATCGACTTCTTCAGCAGTCCAGAAAGAGGCCAAGGC 42516373 Query 37709 ACGTTTATACATCGTCCAAAT 37729 ||| ||||| |||||| Sbjct 42516374 TTTTTTGTACATTTCCCAAAT 42516394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592041417111760