Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq3 96.9 8e-15 seq843 84.2 5e-11 >seq3 Length=72893213 Score = 96.9 bits (106), Expect = 8e-15 Identities = 178/255 (70%), Gaps = 6/255 (2%) Strand=Plus/Plus Query 150307 AGAAGGTAAACTTGATCCACTAATTGGTCGCGAAACTGAACTT-GATGATCTAATTCAGA 150365 || ||| ||||||||||| | |||||| | || ||| || || || |||||| || Sbjct 54730284 AGCAGGAAAACTTGATCCGGTGATTGGTAGGGATGAAGAAATTCGAAGAG-TAATTCGGA 54730342 Query 150366 TTCTTTCTCGTAAAACCAAAAAGAAT--GGTGCGTTAGTTGGTGAACCAGGTGTTGGTAA 150423 || | || | | || || || ||| ||||| ||| ||||||| || ||||||||||| Sbjct 54730343 TTTTATCGAGGAGGACAAAGAATAATCCGGTGC-TTA-TTGGTGAGCCTGGTGTTGGTAA 54730400 Query 150424 AACACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTAT 150483 |||| | | ||||| || |||||||| | || | | || ||||| || | | | Sbjct 54730401 AACAGCAGTAGTTGAAGGGCTAGCACAAAGGATTGTTCGAGGCGATGTCCCGAGTAATTT 54730460 Query 150484 GAAAGATGTTGAAATTCTTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATCG 150543 | |||||| | || | | ||| | ||||| ||||| | |||||| | || ||| | Sbjct 54730461 GGCTGATGTTAGACTTATAGCATTGGACATGGGAGCATTAATTGCTGGAGCAAAATATAG 54730520 Query 150544 TGGTGAATTCGAAGA 150558 |||||||| ||||| Sbjct 54730521 AGGTGAATTTGAAGA 54730535 >seq843 Length=367667 Score = 84.2 bits (92), Expect = 5e-11 Identities = 64/75 (85%), Gaps = 3/75 (4%) Strand=Plus/Plus Query 324420 GCGGAGTAGAGCAGTCTGGTAGCTTGCAAGGCTCATAACCTTGAGGTCGTGTTTGGTTCG 324479 |||| |||||||||| |||||||| ||||||||||||||||||||||| || ||||| Sbjct 70294 GCGGGGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATG---GGTTCA 70350 Query 324480 AATCCCACCTCCGCA 324494 ||||| ||||||| Sbjct 70351 AATCCTGTCTCCGCA 70365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147043517946612