Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq8 93.3 4e-14 seq1 91.5 1e-13 >seq8 Length=47755514 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || || || || || ||||| |||||||| ||| || ||| ||| Sbjct 5426836 ATGCAGATTTTCGTGAAGACTTTGACGGGGAAAACCATCACCTTGGAGGTGGAGAGTTCT 5426777 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | | || | ||| || || ||||| ||||| | || ||||| Sbjct 5426776 GATACGATCGACAATGTGAAGGCTAAGATTCAGGACAAGGAGGGTATCCCGCCGGATCAG 5426717 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| || || ||||| || || |||||||||||| | ||| |||| |||||||| Sbjct 5426716 CAGAGGCTGATTTTTGCTGGGAAGCAATTGGAAGATGGAAGGACTCTGGCTGATTATAAT 5426657 Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757 ||||| || || || ||||||||| Sbjct 5426656 ATTCAGAAGGAGTCAACTCTGCAC 5426633 >seq1 Length=110538649 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| ||||| ||||| || |||||||| || ||| ||| ||| Sbjct 85489188 ATGCAGATCTTTGTTAAAACCTTAACTGGAAAAACCATCACACTGGAAGTTGAAAACTCA 85489247 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | || | ||| ||||| ||||| ||||| | || ||||| Sbjct 85489248 GACACGATAGATAATGTTAAGGCGAAAATTCAAGACAAGGAGGGTATTCCACCGGATCAG 85489307 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| || || ||||| || || |||||||||||| || | || |||||||| Sbjct 85489308 CAGAGGCTGATATTTGCAGGGAAGCAATTGGAAGATGGGCGTACACTCGCAGATTATAAT 85489367 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||| || || ||||| ||| | || | || ||| | || || || Sbjct 85489368 ATTCAAAAGGAGTCAACTCTCCACCTTGTTCTCAGGTTAAGGGGTGGAAT 85489417 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| || || ||||| || ||||| || || ||| || || Sbjct 86551083 AATGCAAATTTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAAGTTGAGAGCTC 86551024 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || ||| | | | || | ||| ||||| ||||| ||||| | || ||||| Sbjct 86551023 GGACACGATAGACAATGTTAAGGCTAAAATTCAAGACAAGGAGGGTATCCCACCGGATCA 86550964 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| || || ||||| || || ||||| |||||| |||| |||| |||||||| Sbjct 86550963 GCAGAGGCTGATTTTTGCTGGGAAGCAATTAGAAGATGGACGAACTCTGGCTGATTATAA 86550904 Query 28733 CATTCAAAAAGAATCTACTCTGCAC 28757 ||| || || ||||| || || ||| Sbjct 86550903 CATCCAGAAGGAATCCACCCTTCAC 86550879 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| || || ||||| || ||||| || || ||| || || Sbjct 85490099 AATGCAAATCTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAAGTTGAGAGCTC 85490158 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || ||| | | | || | ||| ||||| ||||| || || | || ||||| Sbjct 85490159 GGACACGATAGACAATGTTAAGGCCAAAATTCAAGACAAGGAAGGCATTCCACCGGATCA 85490218 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| || || ||||| || |||||||||||||| | ||| | || || ||||| Sbjct 85490219 GCAGAGGCTGATTTTTGCTGGGAAACAATTGGAAGACGGGAGGACTCTTGCTGACTATAA 85490278 Query 28733 CATTCAAAAAGAATCTACTCTGCAC 28757 ||||||||| || || || || ||| Sbjct 85490279 CATTCAAAAGGAGTCAACACTCCAC 85490303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425211963206526