Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq5025 107 2e-18 seq101 96.9 4e-15 seq2 91.5 2e-13 seq11 89.7 6e-13 >seq5025 Length=72118 Score = 107 bits (118), Expect = 2e-18 Identities = 280/420 (67%), Gaps = 8/420 (2%) Strand=Plus/Plus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAG-ATCCC 175289 ||| |||| || ||| | ||| | |||||||| | || | ||||| | | | || || Sbjct 14232 GAGGTTGTAGAATTTTTGAAGAAGCCCGAGAGGT-TTACCGCAGTGGGGGCTCGTATTCC 14290 Query 175290 CCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCAT 175349 ||| | ||||| | ||| || ||||| || |||||||| || || || || Sbjct 14291 GAAAGGTGTTCTTCTTGTTGGTCCTCCCGGTACTGGGAAGACCCTGCTAGCAAAGGCAAT 14350 Query 175350 CGCGGGTGAATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGT 175408 || |||||| | ||| ||||| || || | || | || | ||||| ||||||| Sbjct 14351 TGCCGGTGAAGCGGGTGTTCCATTTTTCTCAATT-TCAGGTTCAGAATTTGTTGAGATGT 14409 Query 175409 TTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAAC 175468 |||||||||| || ||| | || || ||||| || | | ||| |||||| | Sbjct 14410 TTGTTGGTGTAGGAGCCTCTCGAGTCCGTGATCTTTTCAAGAAGGCCAAGGAAAATGCTC 14469 Query 175469 CATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGG 175526 | || ||||| || | ||||| |||||||| || || |||| | | |||| | | Sbjct 14470 CCTGCATTGTATTTGTCGATGAAATTGATGCTGTTGGGCGGCAAAGAGGGACTGGAATTG 14529 Query 175527 TATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGG 175586 | | || ||||| || || ||||| || | || |||||| | || || ||||| || Sbjct 14530 GAGG--AGGGAATGATGAAAGGGAACAGACCCTGAACCAACTATTGACAGAAATGGACGG 14587 Query 175587 CTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 || || | ||||| || | ||| ||||||| || ||||| | ||||| ||||| Sbjct 14588 TTTCGAAGGAAATACTGGTATAATAGTTGTTGCGGCAACCAATCGTGCAGATATTCTTGA 14647 >seq101 Length=1011416 Score = 96.9 bits (106), Expect = 4e-15 Identities = 242/365 (66%), Gaps = 6/365 (2%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 ||||| || || ||||| | || || || ||||| || ||| || | || |||||| Sbjct 765324 CCAGGGACAGGGAAGACATTGCTAGCTAAGGCGATCGCCGGAGAAGCAGAGGTTCCATTC 765265 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 | ||||| || | || || |||||||||||||||||||| || || ||| Sbjct 765264 TTATCTCTCTCTGGTTCAGAGTTCGTTGAGATGTTTGTTGGTGTGGGAGCTTCTAGAGTT 765205 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494 | || | || | | || ||||| ||| ||| | || || |||||||||||| Sbjct 765204 AGGGACTTATTCAACAAGGCAAAGCAAAATTCACCTTGTTTAGTGTTTATTGATGAGATT 765145 Query 175495 GATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAA 175554 ||||| || || | ||| | | ||| | | | |||||| || ||||| || Sbjct 765144 GATGCTGTTGGGAGGCAGAGAGGAACTGATATTGGTGGTGGAAATGATGAAAGAGAGCAG 765085 Query 175555 ACAATTAATCAACTACTCACCGAGATGGATGGCTTTGAC---AATGAGACTGGCATTGTG 175611 ||| |||| ||||| ||||| || |||||||| ||| || || | ||||| | | Sbjct 765084 ACACTTAACCAACTTCTCACTGAAATGGATGG-TTTTACTGGAA--ACACTGGAGTCATT 765028 Query 175612 GTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGT 175671 || ||||| || |||||| | || || |||||| | || | ||| | || || | Sbjct 765027 GTCATTGCTGCTACTAATAGGCCTGAAATTCTTGATCAAGCTTTGCTTAGACCTGGAAGA 764968 Query 175672 TTTGA 175676 ||||| Sbjct 764967 TTTGA 764963 >seq2 Length=96359640 Score = 91.5 bits (100), Expect = 2e-13 Identities = 182/265 (69%), Gaps = 11/265 (4%) Strand=Plus/Minus Query 64957 TACATTAAGGATGGATCTGA--AAAGAAGCAG-TTATTTGAAGCCATCCAAACTGTACCA 65013 ||||| ||||| ||||| ||| |||||| ||||| || | | ||| | || Sbjct 42516115 TACATCAAGGAC---TCTGACGAAAAAAGCAGATTATTCCGCGCAGTTGAGACTATCCCC 42516059 Query 65014 TGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCG-CTCCTT 65072 ||| |||||||||||||||| |||||| | ||| | ||| || || | || Sbjct 42516058 TGTGTTGAGAAGAAGGCGAAGTGGGCACTACGTTGGATCGAC----GGTTCCGAAACATT 42516003 Query 65073 CGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTG 65132 || ||||| | |||| ||||| |||||||| ||||| || ||||| || ||||| Sbjct 42516002 TGCGGAGCGTTTGGTTGCATTTGCTTGTGTGGAAGGTATTTTTTTCTCTGGAAGCTTCTG 42515943 Query 65133 CGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACT 65192 ||||| | ||||| || |||||||| | ||||| || || ||||| || || | Sbjct 42515942 TGCTATATTCTGGTTAAAAAAGCGGGGGTTAATGCCTGGATTAACTTTCTCGAACGAGTT 42515883 Query 65193 TATTTCCCGAGATGAGGGTCTCCAC 65217 ||||| | || |||||| | ||| Sbjct 42515882 AATTTCAAGGGACGAGGGTTTGCAC 42515858 >seq11 Length=61252062 Score = 89.7 bits (98), Expect = 6e-13 Identities = 191/282 (68%), Gaps = 14/282 (5%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || ||||| || |||||||| | || |||| | || ||||| || ||| || || Sbjct 31421906 CCTGGTACTGGTAAGACCCTTTTGGCTAGAGCAGTTGCTGGTGAGGCAGGTGTGCCGTTT 31421847 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || || | || || | ||||| ||| ||||||| |||||||| || || || Sbjct 31421846 TTCTCATGTGCAGCATCAGAGTTTGTTGAGTTGTTTGTGGGTGTGGGAGCTTCTAGAGTA 31421787 Query 175435 CGCGATCTCTTTGAAATCGCCC-GCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 | ||| | ||||| | || | ||| | || |||||||| || ||||||||||| Sbjct 31421786 AGGGATTTGTTTGAGAAGGCGAAGTCGAAAGCG-CCTTGTATTGTGTTTATTGATGAGAT 31421728 Query 175494 TGATGCGGTGGGCAAGCAA-----CGCAGCGC-TGGTGGTATGCCAGCAAATGACGAGAG 175547 |||||| || || | |||| |||| || ||| ||| | |||||| ||||| Sbjct 31421727 TGATGCTGTTGGAAGGCAAAGAGGGGCAGGGCTTGGAGGT------GGAAATGATGAGAG 31421674 Query 175548 AGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTT 175589 || || || |||||||| || | || || |||||||| || Sbjct 31421673 GGAGCAGACTATTAATCAGCTGTTGACAGAAATGGATGGGTT 31421632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596292239878720