Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq854 100 2e-16 seq1898 87.8 1e-12 seq12110 84.2 2e-11 seq1629 84.2 2e-11 seq1 84.2 2e-11 >seq854 Length=364260 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||||||||||||||| ||| |||| || || ||||| || | || |||| Sbjct 70181 ATGCAAATATTTGTCAAGACTCTAACTGGGAAGACCATCACTTTGGAGGTGGAGAGCTCT 70240 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | || ||| ||||||| ||||| || || | || ||||| Sbjct 70241 GATACTATTGATAACGTGAAAGCGAAGATTCAGGACAAGGAGGGTATTCCACCAGATCAG 70300 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||| || |||| ||| ||||| ||||||||||||| | || | || ||||| ||| Sbjct 70301 CAAAGGCTGATTTTTGCTGGTAAGCAGCTGGAGGATGGTCGTACCCTTGCAGATTATAAC 70360 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || || |||||||| || | ||| | ||| Sbjct 70361 ATCCAGAAAGAATCCACCCTTCACCTCGTG 70390 >seq1898 Length=217218 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/213 (69%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---CT 110329 ||||| ||||||||||||||||| || || || ||||| || | ||| |||| || Sbjct 78871 ATGCAGATATTTGTCAAAACTTTGACAGGAAAGACCATCACTTTGGAAGTGGAGAGCTCT 78930 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| ||| | | | | || || || ||| || |||||||| | || ||| Sbjct 78931 GAC---ACTATTGACAACGTCAAGGCCAAAATTCAGGATAAAGAAGGGATCCCACCAGAT 78987 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || || || || | ||| ||||| ||||||||||||| | || | || |||||| Sbjct 78988 CAGCAGAGGCTCATATTTGCTGGTAAGCAGCTGGAGGATGGGCGCACCCTTGCAGATTAC 79047 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || || ||||| ||||| || | ||| | ||| Sbjct 79048 AATATCCAAAAGGAATCCACACTCCACCTTGTG 79080 >seq12110 Length=10092 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 || ||||||||| | || ||||| || ||||| |||| ||| || |||||| |||| Sbjct 4555 GATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGGAAACAGTTGGAA 4496 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485 |||| | || |||| |||||||||||||| |||||||| || | ||| | || || Sbjct 4495 GATGGGCGGACCCTGGCTGATTACAACATTCAGAAAGAATCAACTCTTCACCTTGTTTTG 4436 Query 110486 AGACTGCGAGGGGGAA 110501 || || | || |||| Sbjct 4435 AGGCTCAGGGGAGGAA 4420 >seq1629 Length=244661 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||| || | |||||||| || || ||| | ||| || | Sbjct 134373 ATGCAGATCTTTGTCAAGACGCTTACCGGCAAGACAATCACCCTTGAAGTTGAAAGTTCA 134432 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | | || ||| ||||| ||||| ||||| | || || || Sbjct 134433 GATACCATCGACAATGTTAAAGCAAAGATCCAAGACAAGGAAGGTATTCCTCCAGACCAG 134492 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||||| || | ||| || || || || ||||| | || ||| |||| ||||||||| Sbjct 134493 CAGAGACTGATCTTTGCCGGGAAGCAACTTGAGGACGGGAGGACATTGGCAGATTACAAC 134552 Query 110453 ATTCAAAAAGAATCTACGTTGCAC 110476 ||||| ||||| || || ||||| Sbjct 134553 ATTCAGAAAGAGTCAACCCTGCAC 134576 >seq1 Length=110538649 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAG-CCTG 110330 ||||||||| || || ||||||||||| || || ||||| || | ||| ||| || Sbjct 85490327 AATGCAAATCTTCGTTAAAACTTTAACAGGAAAGACCATCACACTGGAAGTTGAGAGCTC 85490386 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 | || || | | | | || || |||||| || || || || | || ||| | Sbjct 85490387 A-GACACGATTGACAATGTGAAGGCGAAGATACAGGATAAGGAGGGTATTCCACCGGACC 85490445 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 |||| || ||||| | ||| || || ||| ||||||||| || ||| |||| ||||||| Sbjct 85490446 AACAGAGGCTTATCTTTGCTGGGAAGCAGTTGGAGGATGGTAGGACATTGGCTGATTACA 85490505 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGA 110500 | || || || || ||||| | || | ||| | || ||| | || ||| Sbjct 85490506 ATATCCAGAAGGAGTCTACTCTCCATCTTGTGCTGAGGCTGAGGGGTGGA 85490555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412654458128642