Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq2 125 1e-22 >seq2 Length=96359640 Score = 125 bits (138), Expect = 1e-22 Identities = 180/250 (72%), Gaps = 3/250 (1%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| |||||||| || |||||||| | ||||| ||||| || ||||||||| Sbjct 42516189 GCCTCGGCAACTTGGACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCG 42516248 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| |||||| |||||||| |||||||| |||| || || | || || | | || Sbjct 42516249 TCGGAGGCGGCAAAAAAGGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGGGTTAGG 42516308 Query 796270 GAGACCCAGTGGACCG-TGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGC 796328 | |||||| ||| | | |||| | ||||| || || || ||||| || ||||| Sbjct 42516309 GTTTCCCAGT-GACGGTTATCGGAAGATAAATCGACTTCTTCAGCAGTCCAGAAAGAGGC 42516367 Query 796329 CTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCG 796388 | ||| ||||||||||| ||||| || || |||| | || ||||||| | || || Sbjct 42516368 CAAGGCTTTTTTGTACATTTCCCAAATTTGTGGGTATTGAATTGGGAACATACAGAACCG 42516427 Query 796389 AT-TGGGGTT 796397 || |||| || Sbjct 42516428 ATCTGGGCTT 42516437 Score = 89.7 bits (98), Expect = 8e-12 Identities = 193/288 (67%), Gaps = 7/288 (2%) Strand=Plus/Plus Query 794380 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAG 794439 || ||||| | || ||||| || | ||| || || |||||||| || || |||||||| Sbjct 42515904 CCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAGCACAGAAGCTTCCAGAGAAAAAA 42515963 Query 794440 ATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTG 794499 || || || || ||||| | || | ||||| ||||| || || || || Sbjct 42515964 ATACCTTCCACACAAGCAAATGCAACCAAACGCTCCGCAAATGTTTCGGAACCGTC---- 42516019 Query 794500 TTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCG 794559 |||||| | ||||||| ||||| ||| || |||| | || || | ||| Sbjct 42516020 --GATCCAACGTAGTGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCG 42516077 Query 794560 CGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAG 794619 || || | | || ||| | | |||||||| ||| | || | || || ||| Sbjct 42516078 CGGAATAATCTGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACTGTAC 42516137 Query 794620 GTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATA-AAAGCA 794666 |||| |||||||||||||| || ||||| |||||||| || |||||| Sbjct 42516138 ATCTCGGAGTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCA 42516185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7912289904578166