Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq1 102 6e-17 seq1898 89.7 4e-13 seq1629 84.2 2e-11 seq8 84.2 2e-11 >seq1 Length=110538649 Score = 102 bits (112), Expect = 6e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| ||||| ||||| ||||| || |||||||| || | ||| ||| ||| Sbjct 86550629 AATGCAAATCTTTGTTAAAACCTTAACGGGAAAAACCATCACATTAGAAGTTGAGAGCTC 86550570 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 || || | | | | || || ||||| ||||| ||||| | || || | Sbjct 86550569 A-GACACGATTGACAATGTGAAGGCGAAGATACGGGATAAGGAAGGTATTCCGCCCGACC 86550511 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| || || | ||| || |||||| ||||||| | | ||| |||| ||||||| Sbjct 86550510 AGCAGAGGCTCATCTTTGCTGGAAAACAGTTGGAGGATGGTAGGACACTGGCAGACTACA 86550451 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGA 107783 | || || |||||||||||| | || | ||| |||| ||| | || ||| Sbjct 86550450 ATATCCAGAAGGAGTCTACGCTCCATCTTGTGCTGAGGTTGAGGGGTGGA 86550401 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| ||||| || || ||||| || ||||| || || | ||| ||| ||| Sbjct 85490099 AATGCAAATCTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAAGTTGAGAGCTC 85490158 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 | || || | | | | || || || ||| || || |||||| | || ||||| Sbjct 85490159 G-GACACGATAGACAATGTTAAGGCCAAAATTCAAGACAAGGAAGGCATTCCACCGGATC 85490217 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| || |||| ||| || ||||| |||| |||| | || | || ||||| | Sbjct 85490218 AGCAGAGGCTGATTTTTGCTGGGAAACAATTGGAAGACGGGAGGACTCTTGCTGACTATA 85490277 Query 107734 ACATTCAAAAGGAGTCTAC 107752 |||||||||||||||| || Sbjct 85490278 ACATTCAAAAGGAGTCAAC 85490296 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| || || |||||||||||||| || ||||| || | ||| ||| ||| Sbjct 85490327 AATGCAAATCTTCGTTAAAACTTTAACAGGAAAGACCATCACACTGGAAGTTGAGAGCTC 85490386 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 || || | | | | || || ||||| ||||| || || | || ||| | Sbjct 85490387 A-GACACGATTGACAATGTGAAGGCGAAGATACAGGATAAGGAGGGTATTCCACCGGACC 85490445 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 | ||||| ||||| | ||| || || ||| ||||||| | | ||| |||| || |||| Sbjct 85490446 AACAGAGGCTTATCTTTGCTGGGAAGCAGTTGGAGGATGGTAGGACATTGGCTGATTACA 85490505 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGA 107783 | || || ||||||||||| | || | ||| |||| || | || ||| Sbjct 85490506 ATATCCAGAAGGAGTCTACTCTCCATCTTGTGCTGAGGCTGAGGGGTGGA 85490555 >seq1898 Length=217218 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || |||||||||||||| ||||| || ||||| || | ||| |||| ||| Sbjct 78871 ATGCAGATATTTGTCAAAACTTTGACAGGAAAGACCATCACTTTGGAAGTGGAGAGCTCT 78930 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || ||| | | | | || || || ||| ||||||||||| | || ||||| Sbjct 78931 -GACACTATTGACAACGTCAAGGCCAAAATTCAGGATAAAGAAGGGATCCCACCAGATCA 78989 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | ||| ||||| ||||||||||| | || | || || ||||| Sbjct 78990 GCAGAGGCTCATATTTGCTGGTAAGCAGCTGGAGGATGGGCGCACCCTTGCAGATTACAA 79049 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || |||||||| || || | ||| | ||| Sbjct 79050 TATCCAAAAGGAATCCACACTCCACCTTGTG 79080 >seq1629 Length=244661 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| || | || ||||| || || ||| | ||| || | Sbjct 134373 ATGCAGATCTTTGTCAAGACGCTTACCGGCAAGACAATCACCCTTGAAGTTGAAAGTTCA 134432 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | | || ||| |||||| || || ||||| | || || ||| Sbjct 134433 GATACCATCGACAATGTTAAAGCAAAGATCCAAGACAAGGAAGGTATTCCTCCAGACCAG 134492 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||||| || | ||| || || || || ||||||| | ||| |||| || |||||| Sbjct 134493 CAGAGACTGATCTTTGCCGGGAAGCAACTTGAGGACGGGAGGACATTGGCAGATTACAAC 134552 Query 107736 ATTCAAAAGGAGTCTACGTTGCAC 107759 ||||| || ||||| || ||||| Sbjct 134553 ATTCAGAAAGAGTCAACCCTGCAC 134576 >seq8 Length=47755514 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || || |||||||| |||| || ||||| || ||| | || || ||| Sbjct 5427520 ATGCAGATCTTCGTCAAAACCCTAACTGGGAAAACAATCACCCTTGAGGTTGAAAGCTC- 5427462 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| ||| | | | | || || |||||| ||||| ||||| | || ||| || Sbjct 5427461 CGACACTATTGACAACGTTAAGGCTAAGATTCAGGATAAGGAAGGAATCCCACCGGACCA 5427402 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | || | ||| || || ||||| || |||| || ||| | || || ||||| Sbjct 5427401 GCAGAGGTTGATCTTTGCCGGAAAGCAGCTCGAAGACGGCAGAACCCTAGCTGATTACAA 5427342 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||| || ||||||||||| | ||| |||| Sbjct 5427341 CATCCAGAAGGAGTCTACCCTTCACTTGGT 5427312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398695988398666